RetrogeneDB ID: | retro_itri_800 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393325.1:6152809..6153058(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUTF2 | ||
Ensembl ID: | ENSSTOG00000002878 | ||
Aliases: | None | ||
Description: | nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722] |
Percent Identity: | 83.13 % |
Parental protein coverage: | 65.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGDKPIWEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLTSLPFQKIQHSITA |
MG..P.WEQIGSSFIQHYYQL.DNDRT.LGAIYID.S.L.WEGQQFQG.AAIVEKL.SLPFQK.Q..ITA | |
Retrocopy | MGNRPVWEQIGSSFIQHYYQLLDNDRTELGAIYIDTSHLKWEGQQFQGTAAIVEKLSSLPFQKLQPRITA |
Parental | QDHQPTPDSCIIS |
QDHQPT.DSCIIS | |
Retrocopy | QDHQPTLDSCIIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017548 | 5 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003059 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000023925 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000009874 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000025175 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000012038 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000005517 | 6 retrocopies | |
Mus musculus | ENSMUSG00000008450 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006322 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006100 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030295 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000002878 | 1 retrocopy |
retro_itri_800 ,
|
Drosophila melanogaster | FBgn0031145 | 1 retrocopy |