RetrogeneDB ID:

retro_mdom_37

Retrocopy
location
Organism:Opossum (Monodelphis domestica)
Coordinates:3:11562017..11562386(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMODG00000020270
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMODG00000005517
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mdom_37
ATGGGAGACGAGCCGTTTGGGGAGCGGACTGGATCCAGCTTTGTGCACCATCACGACCAGATATTTGATGATGACAGAAC
CCCATTAGGAGCACTACAAATTGATGCGTCTTGCCCTACATGGGAAGGGCAGCGATGCCAAGGCAAAGCAGCCATCGTGG
AGAAGTTGTCTAGCCTTCCATTTCAGAAAAGACAACGTAGCATCACAGCCACTCCTGACGGCTGCATTCTTGGTATGATT
GTGGGACAGCTAAAGGCTCGTGAAGACCCCATCATGGGATTCCACCAGATATTTCTATCAAAGAACATCACTGATGCTTG
GGTCTGCACCAAGGCCATGTTAAGGCTGGCGTGCCACAACTTCAGCTGA

ORF - retro_mdom_37 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.14 %
Parental protein coverage: 55.12 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGDKPIWEQIGSSFVQHYYQIFDNDRTQLGAIYIDASCLTWEGQQCQGKAAIVEKLSSLPFQKIQHSITA
MGD.P..E..GSSFV.H..QIFD.DRT.LGA..IDASC.TWEGQ.CQGKAAIVEKLSSLPFQK.Q.SITA
RetrocopyMGDEPFGERTGSSFVHHHDQIFDDDRTPLGALQIDASCPTWEGQRCQGKAAIVEKLSSLPFQKRQRSITA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 0 .00 RPM
SRP007412_cerebellum 0 .00 RPM 0 .00 RPM
SRP007412_heart 0 .00 RPM 0 .00 RPM
SRP007412_kidney 0 .00 RPM 0 .00 RPM
SRP007412_liver 0 .00 RPM 0 .00 RPM
SRP007412_testis 0 .00 RPM 0 .00 RPM
Monodelphis domestica was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mdom_37 retrocopy.
Monodelphis domestica was not studied using FANTOM5 data.
retro_mdom_37 was not experimentally validated.

Retrocopy orthology:
Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 35 parental genes, and 131 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000175485 retrocopies
Bos taurus ENSBTAG000000064142 retrocopies
Choloepus hoffmanni ENSCHOG000000030593 retrocopies
Callithrix jacchus ENSCJAG0000001601514 retrocopies
Cavia porcellus ENSCPOG000000035211 retrocopy
Equus caballus ENSECAG000000215301 retrocopy
Erinaceus europaeus ENSEEUG000000034702 retrocopies
Echinops telfairi ENSETEG000000163549 retrocopies
Felis catus ENSFCAG000000081673 retrocopies
Homo sapiens ENSG000001028987 retrocopies
Gorilla gorilla ENSGGOG000000239255 retrocopies
Loxodonta africana ENSLAFG000000310371 retrocopy
Macropus eugenii ENSMEUG0000000987411 retrocopies
Myotis lucifugus ENSMLUG000000251753 retrocopies
Macaca mulatta ENSMMUG000000120386 retrocopies
Monodelphis domestica ENSMODG00000005517 6 retrocopies
Mustela putorius furoENSMPUG000000067374 retrocopies
Mus musculus ENSMUSG000000084501 retrocopy
Nomascus leucogenys ENSNLEG000000048897 retrocopies
Oryctolagus cuniculus ENSOCUG000000063221 retrocopy
Otolemur garnettii ENSOGAG000000155682 retrocopies
Ochotona princeps ENSOPRG000000137274 retrocopies
Procavia capensis ENSPCAG000000153441 retrocopy
Pongo abelii ENSPPYG000000074727 retrocopies
Pan troglodytes ENSPTRG000000082487 retrocopies
Pteropus vampyrus ENSPVAG000000166051 retrocopy
Rattus norvegicus ENSRNOG000000189454 retrocopies
Sorex araneus ENSSARG000000074721 retrocopy
Sarcophilus harrisii ENSSHAG000000061001 retrocopy
Sus scrofa ENSSSCG000000302953 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000028781 retrocopy
Tupaia belangeri ENSTBEG000000110161 retrocopy
Tarsius syrichta ENSTSYG000000107023 retrocopies
Tursiops truncatus ENSTTRG000000092512 retrocopies
Drosophila melanogaster FBgn00311451 retrocopy



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