RetrogeneDB ID: | retro_mdom_1489 | ||
Retrocopylocation | Organism: | Opossum (Monodelphis domestica) | |
Coordinates: | 5:297342979..297343306(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMODG00000020274 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMODG00000005517 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.07 % |
Parental protein coverage: | 85.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | YQIFDNDRTQLGAIYIDASCLTWEGQQCQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCILSMVVGQ |
YQIFDNDRTQ.GAI..DAS.LT.EGQQCQG.AA.VEKLSSLPFQKIQ..ITAQDHQ.TPDSCILSMVVGQ | |
Retrocopy | YQIFDNDRTQVGAISLDASFLTCEGQQCQGQAAMVEKLSSLPFQKIQYCITAQDHQLTPDSCILSMVVGQ |
Parental | LKADEDPIMGFHQIFLLKNINDAWVCTNDMFRLALHNFG |
LK..EDPIMGF.QIFLLKNINDAWVCTNDMFRLALHNFG | |
Retrocopy | LKGNEDPIMGFYQIFLLKNINDAWVCTNDMFRLALHNFG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .00 RPM |