Parental gene:

ENSSSCG00000030295

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:6:25643316..25663655(-)


>ENSSSCG00000030295
ATGGGAGACAAGCCAATTTGGGAGCAGATTGGATCCAGCTTCATTCAACATTACTACCAGTTATTTGATAACGACAGAAC
CCAACTAGGCGCAATTTATATTGACGCTTCATGCCTTACGTGGGAAGGACAGCAATTCCAGGGAAAAACTGCCATTGTGG
AGAAATTATCTAGCCTTCCGTTCCAGAAAATCCAGCATAGCATCACGGCACAAGACCATCAGCCCACACCAGATAGCTGC
ATCATCAGCATGGTTGTGGGCCAGCTCAAGGCTGACGAAGACCCCATCATGGGGTTCCACCAGATGTTCCTATTAAAGAA
CATCAATGATGCTTGGGTTTGCACCAATGACATGTTCAGGCTTGCCCTGCACAACTTTGGCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 43 .40 RPM
SRP014902_testis 20 .09 RPM
SRP018856_adipose 17 .94 RPM
SRP018288_kidney 27 .68 RPM
SRP018288_lung 67 .51 RPM
SRP018288_liver 17 .91 RPM
SRP018288_heart 27 .92 RPM
SRP035408_liver 12 .62 RPM
SRP035408_brain 20 .52 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017548 possible_ortholog 5 retrogenes
retro_amel_1225, retro_amel_134, retro_amel_1485, retro_amel_415, retro_amel_445,
Bos taurus ENSBTAG00000006414 ortholog_one2one 2 retrogenes
retro_btau_1573, retro_btau_881,
Choloepus hoffmanni ENSCHOG00000003059 possible_ortholog 3 retrogenes
retro_chof_1386, retro_chof_1619, retro_chof_2488,
Callithrix jacchus ENSCJAG00000016015 possible_ortholog 14 retrogenes
retro_cjac_1328, retro_cjac_2247, retro_cjac_2562, retro_cjac_2864, retro_cjac_2913, retro_cjac_2953, retro_cjac_2978, retro_cjac_3126, retro_cjac_3299, retro_cjac_4044, retro_cjac_4173, retro_cjac_587, retro_cjac_777, retro_cjac_924,
Cavia porcellus ENSCPOG00000003521 ortholog_one2one 1 retrogene
retro_cpor_1368,
Equus caballus ENSECAG00000021530 possible_ortholog 1 retrogene
retro_ecab_151,
Erinaceus europaeus ENSEEUG00000003470 ortholog_one2one 2 retrogenes
retro_eeur_149, retro_eeur_571,
Echinops telfairi ENSETEG00000016354 possible_ortholog 9 retrogenes
retro_etel_1700, retro_etel_1737, retro_etel_1909, retro_etel_1925, retro_etel_245, retro_etel_281, retro_etel_301, retro_etel_399, retro_etel_746,
Felis catus ENSFCAG00000008167 possible_ortholog 3 retrogenes
retro_fcat_154, retro_fcat_743, retro_fcat_845,
Homo sapiens ENSG00000102898 possible_ortholog 7 retrogenes
retro_hsap_1322, retro_hsap_1480, retro_hsap_1858, retro_hsap_207, retro_hsap_4181, retro_hsap_4854, retro_hsap_544,
Gorilla gorilla ENSGGOG00000023925 possible_ortholog 5 retrogenes
retro_ggor_1032, retro_ggor_2152, retro_ggor_279, retro_ggor_2806, retro_ggor_3028,
Loxodonta africana ENSLAFG00000031037 possible_ortholog 1 retrogene
retro_lafr_623,
Macropus eugenii ENSMEUG00000009874 ortholog_one2many 11 retrogenes
retro_meug_1023, retro_meug_136, retro_meug_1539, retro_meug_1585, retro_meug_1778, retro_meug_2140, retro_meug_253, retro_meug_282, retro_meug_352, retro_meug_676, retro_meug_748,
Myotis lucifugus ENSMLUG00000025175 possible_ortholog 3 retrogenes
retro_mluc_1265, retro_mluc_2194, retro_mluc_911,
Macaca mulatta ENSMMUG00000012038 possible_ortholog 6 retrogenes
retro_mmul_1160, retro_mmul_1270, retro_mmul_2127, retro_mmul_2169, retro_mmul_2593, retro_mmul_27,
Monodelphis domestica ENSMODG00000005517 ortholog_many2many 6 retrogenes
retro_mdom_1031, retro_mdom_1291, retro_mdom_1488, retro_mdom_1489, retro_mdom_1903, retro_mdom_37,
Mustela putorius furo ENSMPUG00000006737 possible_ortholog 4 retrogenes
retro_mputfur_229, retro_mputfur_614, retro_mputfur_714, retro_mputfur_962,
Mus musculus ENSMUSG00000008450 ortholog_one2many 1 retrogene
retro_mmus_232,
Nomascus leucogenys ENSNLEG00000004889 possible_ortholog 7 retrogenes
retro_nleu_1295, retro_nleu_1791, retro_nleu_1855, retro_nleu_2374, retro_nleu_2384, retro_nleu_2953, retro_nleu_731,
Oryctolagus cuniculus ENSOCUG00000006322 possible_ortholog 1 retrogene
retro_ocun_115,
Otolemur garnettii ENSOGAG00000015568 ortholog_one2one 2 retrogenes
retro_ogar_2713, retro_ogar_2811,
Ochotona princeps ENSOPRG00000013727 possible_ortholog 4 retrogenes
retro_opri_1089, retro_opri_1102, retro_opri_1170, retro_opri_229,
Procavia capensis ENSPCAG00000015344 possible_ortholog 1 retrogene
retro_pcap_56,
Pongo abelii ENSPPYG00000007472 possible_ortholog 7 retrogenes
retro_pabe_1101, retro_pabe_1229, retro_pabe_1515, retro_pabe_3421, retro_pabe_3772, retro_pabe_433, retro_pabe_502,
Pan troglodytes ENSPTRG00000008248 possible_ortholog 7 retrogenes
retro_ptro_1001, retro_ptro_1239, retro_ptro_2835, retro_ptro_3230, retro_ptro_338, retro_ptro_409, retro_ptro_903,
Pteropus vampyrus ENSPVAG00000016605 possible_ortholog 1 retrogene
retro_pvam_843,
Rattus norvegicus ENSRNOG00000018945 ortholog_one2one 4 retrogenes
retro_rnor_1149, retro_rnor_1616, retro_rnor_2427, retro_rnor_545,
Sorex araneus ENSSARG00000007472 possible_ortholog 1 retrogene
retro_sara_333,
Sarcophilus harrisii ENSSHAG00000006100 ortholog_one2many 1 retrogene
retro_shar_274,
Ictidomys tridecemlineatus ENSSTOG00000002878 possible_ortholog 1 retrogene
retro_itri_800,
Tupaia belangeri ENSTBEG00000011016 possible_ortholog 1 retrogene
retro_tbel_7,
Tarsius syrichta ENSTSYG00000010702 possible_ortholog 3 retrogenes
retro_tsyr_1689, retro_tsyr_380, retro_tsyr_745,
Tursiops truncatus ENSTTRG00000009251 ortholog_one2one 2 retrogenes
retro_ttru_1534, retro_ttru_433,
Drosophila melanogaster FBgn0031145 ortholog_many2many 1 retrogene
retro_dmel_27,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_710 82.81 100.00
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2. retro_sscr_740 77.67 80.31
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3. retro_sscr_1223 67.09 59.84
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Download FASTA sequences of all ENSSSCG00000030295 retrocopies