RetrogeneDB ID:

retro_meug_1219

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold32974:20223..20826(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PRDX3
Ensembl ID:ENSMEUG00000007732
Aliases:None
Description:peroxiredoxin 3 [Source:HGNC Symbol;Acc:9354]


Retrocopy-Parental alignment summary:






>retro_meug_1219
CCTGCTGCTGCTAGAAACACATTCCTGGCCAATTCAAAATTTTCCTTCAGCACCAGTTCTTCAACTTATGTGCCTGCTGT
AACCCAACATGCTCCATATTTTAAGGGTACAGCTGTTGTCAAAGGAGAATTCAAAGAAATCAGCCTTGATGACTTTAAAG
GCAAATATTTGGTGCTTTTCTTCTATCCTCTTGATTTCACTTTTGTGCGTCTGACAGAAATTGTTGCTTTTAATGACAAA
GCTAACGAATTTCATGATGTGAGCTGTGAAGTCGTTGCGGTTTCAGTGGATTCCCAATTTAGCCATCTGGCCTGAATAAA
TACACCAAGAAATAGTGGTTGTTTAGGCCATATGAATATTCTGCTCCTGTCAGATTTAACCAAACAAATTTCCCAGGACT
ATGGTGTTCTGCTTGAAGGACCTGGCCTTGCATTAAGAGGTCTCTTCTTAATTGACCCTAACGGAGTTATCAAACACATG
AGTATCAATGATCTCCCTGTGGGCCAAAGTGTGGAAGAAACTCTTTGTTTGGTGAAGGCGTTCCAGTTTGTGGAAGTACA
TGGAGAGGTCTGTCCAGCAAATTGGACACCAAATTCGCTTACG

ORF - retro_meug_1219 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.05 %
Parental protein coverage: 84.45 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalPANVMPTSANHSKFSFSTSSSTYVPAVTQHAPYFKGTAVVKGEFKEISLDDFKGKYLVLFFYPLDFTFVC
PA....T....SKFSFSTSSSTYVPAVTQHAPYFKGTAVVKGEFKEISLDDFKGKYLVLFFYPLDFTFV.
RetrocopyPAAARNTFLANSKFSFSTSSSTYVPAVTQHAPYFKGTAVVKGEFKEISLDDFKGKYLVLFFYPLDFTFVR
ParentalPTEIVAFSDKANEFHDVNCEVVAVSVDSHFSHLAWINTPRKSGGLGHMNIPLLSDLTKQISRDYGVLLEG
.TEIVAF.DKANEFHDV.CEVVAVSVDS.FSHLA.INTPR.SG.LGHMNI.LLSDLTKQIS.DYGVLLEG
RetrocopyLTEIVAFNDKANEFHDVSCEVVAVSVDSQFSHLA*INTPRNSGCLGHMNILLLSDLTKQISQDYGVLLEG
ParentalPGVALRGLFLIDPNGVIKHMSINDLPVGRSVEETLRLVKAFQFVEVHGEVCPANWTPNSPT
PG.ALRGLFLIDPNGVIKHMSINDLPVG.SVEETL.LVKAFQFVEVHGEVCPANWTPNS.T
RetrocopyPGLALRGLFLIDPNGVIKHMSINDLPVGQSVEETLCLVKAFQFVEVHGEVCPANWTPNSLT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_1219 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_1219 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 49 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000087311 retrocopy
Canis familiaris ENSCAFG000000121093 retrocopies
Callithrix jacchus ENSCJAG000000196363 retrocopies
Ciona savignyi ENSCSAVG000000012091 retrocopy
Dasypus novemcinctus ENSDNOG000000013593 retrocopies
Equus caballus ENSECAG000000170261 retrocopy
Erinaceus europaeus ENSEEUG000000092991 retrocopy
Homo sapiens ENSG000001656723 retrocopies
Gorilla gorilla ENSGGOG000000263641 retrocopy
Macropus eugenii ENSMEUG000000068204 retrocopies
Macropus eugenii ENSMEUG00000007732 3 retrocopies
retro_meug_1219 , retro_meug_1735, retro_meug_62,
Microcebus murinus ENSMICG000000076271 retrocopy
Myotis lucifugus ENSMLUG000000128713 retrocopies
Macaca mulatta ENSMMUG000000082942 retrocopies
Monodelphis domestica ENSMODG000000092861 retrocopy
Mustela putorius furoENSMPUG000000030741 retrocopy
Mus musculus ENSMUSG000000249971 retrocopy
Nomascus leucogenys ENSNLEG000000166983 retrocopies
Oryctolagus cuniculus ENSOCUG000000173342 retrocopies
Pongo abelii ENSPPYG000000027001 retrocopy
Pan troglodytes ENSPTRG000000029921 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000025372 retrocopies
Tupaia belangeri ENSTBEG000000110645 retrocopies
Tursiops truncatus ENSTTRG000000108782 retrocopies



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