RetrogeneDB ID:

retro_nleu_1521

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397297.1:18699331..18699787(-)
Located in intron of:ENSNLEG00000015164
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PRDX3
Ensembl ID:ENSNLEG00000016698
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1521
ATGGTAGCTGCTGTGGGAAGGCTGCTCTGAGCATCGGTTGCCCGACATGTGAGTGCCATTCCTTGGGGCACTTCTGCCAC
TGCAGCCCTCAAGCTTGCTGCTTCCGGAAGAACGAGCTTGACAAACATATCATGGTCTGGTTCCAGTCAAGCGAAATTCT
TTAGCACCAGCTCCTCATACCATGCACCTGCTGTCGCCCAGCATGCACCCTATTTTAAGGGTACAGCCACTGTCAATGGA
GAGTTCAAAGACCTAAGCCTTGAGGACTTTAAGGGGAAATAATTTGGTGCTTTTCTTCTATCCTTTGGATTTCACCTTCA
TGGTCCTACAGAAACTGTTGCTTTTAGTGACAAAGCTAAGGAATTTCATGATGTGAACTGTGAAGTTGCTGTGGTCTCAG
TGGATTCCCACTTTAGTCATCTTGCCTGGATAAATACACCAAGAAATAATGGTGGC

ORF - retro_nleu_1521 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.42 %
Parental protein coverage: 59.38 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAAAVGRLLRASVARHVSAIPWGISATAALRPAACGRTSLTNLLCSGSRQAKLFSTSSSYHAPAVTQHAP
M.AAVGRLL.ASVARHVSAIPWG.SATAAL..AA.GRTSLTN...SGS.QAK.FSTSSSYHAPAV.QHAP
RetrocopyMVAAVGRLL*ASVARHVSAIPWGTSATAALKLAASGRTSLTNISWSGSSQAKFFSTSSSYHAPAVAQHAP
ParentalYFKGTAVVNGEFKDLSLDDFKGK-YLVLFFYPLDFTFVC-PTEIVAFSDKANEFHDVNCEVVAVSVDSHF
YFKGTA.VNGEFKDLSL.DFKGK..LVLFFYPLDFTF...PTE.VAFSDKA.EFHDVNCEV..VSVDSHF
RetrocopyYFKGTATVNGEFKDLSLEDFKGK>NLVLFFYPLDFTFMV<PTETVAFSDKAKEFHDVNCEVAVVSVDSHF
ParentalSHLAWINTPRKNGG
SHLAWINTPR.NGG
RetrocopySHLAWINTPRNNGG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1521 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 24 parental genes, and 48 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000087311 retrocopy
Canis familiaris ENSCAFG000000121093 retrocopies
Callithrix jacchus ENSCJAG000000196363 retrocopies
Ciona savignyi ENSCSAVG000000012091 retrocopy
Dasypus novemcinctus ENSDNOG000000013593 retrocopies
Equus caballus ENSECAG000000170261 retrocopy
Erinaceus europaeus ENSEEUG000000092991 retrocopy
Homo sapiens ENSG000001656723 retrocopies
Gorilla gorilla ENSGGOG000000263641 retrocopy
Macropus eugenii ENSMEUG000000077323 retrocopies
Microcebus murinus ENSMICG000000076271 retrocopy
Myotis lucifugus ENSMLUG000000128713 retrocopies
Macaca mulatta ENSMMUG000000082942 retrocopies
Monodelphis domestica ENSMODG000000092861 retrocopy
Mustela putorius furoENSMPUG000000030741 retrocopy
Nomascus leucogenys ENSNLEG000000128002 retrocopies
Nomascus leucogenys ENSNLEG000000145242 retrocopies
Nomascus leucogenys ENSNLEG00000016698 3 retrocopies
retro_nleu_1521 , retro_nleu_2118, retro_nleu_2453,
Oryctolagus cuniculus ENSOCUG000000173342 retrocopies
Pongo abelii ENSPPYG000000027001 retrocopy
Pan troglodytes ENSPTRG000000029921 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000025372 retrocopies
Tupaia belangeri ENSTBEG000000110645 retrocopies
Tursiops truncatus ENSTTRG000000108782 retrocopies



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