Parental gene:

ENSCAFG00000012109

Aliases:PRDX3, AOP1
Description:None
Organism:Dog (Canis familiaris)
Coordinates:28:29396332..29403719(-)


>ENSCAFG00000012109
ATGGCGGCCGCGGTGGGAAGGTTCCTCCGGGCTTCGATTGCCCGACATGTGAGTGCTATTCCATGGGGCATCTCTGCCTC
CGCAGCCCTTAGACCTGCTGCTTCCAGAAGAACATGCCTGACAAATGTATTGTGGTCTGGTTCTGGTCAAGCAAAATTCG
CTTTTAGCACCAGTTCCTCCTACCACGCTCCTGCCGTCACCCAGCATGCGCCCTACTTTAAGGGCACTGCCGTTGTCAAC
GGAGAGTTTAAAGACCTAACCCTCGATGACTTTAAGGGGAGATATTTGGTGCTTTTCTTCTATCCGTTGGACTTCACCTT
TGTGTGTCCTACAGAAATTGTTGCTTTCAGTGACAAAGCCAAAGAATTTCACGACGTGAACTGTGATGTTGTTGCAGTGT
CAGTGGATTCCCACTTCACCCATCTTGCCTGGATCAACACACCGCGGAAGAATGGCGGTTTGGGCCACATGAACATTGCA
CTCCTGTCAGATCTGACTAAACAGATTTCTCGAGACTATGGCGTGCTGTTAGAAGGCCCCGGTATTGCTCTAAGAGGTCT
TTTCATCATTGACCCCAATGGAGTCATCAAGCATTTGAGTGTCAATGATCTCCCTGTGGGCCGAAGTGTGGAAGAGACCC
TCCGCTTGGTGAAGGCATTCCAGTTTGTGGAAACCCATGGAGAAGTCTGCCCAGCAAACTGGACCCCGGATTCTCCTACA
ATCAAGCCACATCCAACTGCTTCCAAAGAATACTTTGAGAAGGTAAATCAGTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 24 .70 RPM
SRP017611_brain 29 .93 RPM
SRP017611_kidney 320 .41 RPM
SRP017611_liver 80 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000008731 ortholog_one2many 1 retrogene
retro_btau_562,
Canis familiaris ENSCAFG00000004567 within_species_paralog 5 retrogenes
retro_cfam_1313, retro_cfam_270, retro_cfam_577, retro_cfam_834, retro_cfam_988,
Canis familiaris ENSCAFG00000017163 within_species_paralog 3 retrogenes
retro_cfam_1603, retro_cfam_1624, retro_cfam_1739,
Callithrix jacchus ENSCJAG00000019636 ortholog_one2many 3 retrogenes
retro_cjac_1333, retro_cjac_3082, retro_cjac_653,
Ciona savignyi ENSCSAVG00000001209 ortholog_one2many 1 retrogene
retro_csav_6,
Dasypus novemcinctus ENSDNOG00000001359 ortholog_one2many 3 retrogenes
retro_dnov_1052, retro_dnov_2373, retro_dnov_745,
Equus caballus ENSECAG00000017026 ortholog_one2many 1 retrogene
retro_ecab_408,
Erinaceus europaeus ENSEEUG00000009299 ortholog_one2many 1 retrogene
retro_eeur_238,
Homo sapiens ENSG00000165672 ortholog_one2many 3 retrogenes
retro_hsap_1253, retro_hsap_2587, retro_hsap_2653,
Gorilla gorilla ENSGGOG00000026364 ortholog_one2many 1 retrogene
retro_ggor_986,
Macropus eugenii ENSMEUG00000007732 ortholog_one2many 3 retrogenes
retro_meug_1219, retro_meug_1735, retro_meug_62,
Microcebus murinus ENSMICG00000007627 ortholog_one2many 1 retrogene
retro_mmur_475,
Myotis lucifugus ENSMLUG00000012871 ortholog_one2many 3 retrogenes
retro_mluc_1203, retro_mluc_1522, retro_mluc_2069,
Macaca mulatta ENSMMUG00000008294 ortholog_one2many 2 retrogenes
retro_mmul_1307, retro_mmul_1517,
Monodelphis domestica ENSMODG00000009286 ortholog_one2many 1 retrogene
retro_mdom_1062,
Mustela putorius furo ENSMPUG00000003074 ortholog_one2many 1 retrogene
retro_mputfur_1032,
Mus musculus ENSMUSG00000024997 possible_ortholog 1 retrogene
retro_mmus_2443,
Nomascus leucogenys ENSNLEG00000016698 ortholog_one2many 3 retrogenes
retro_nleu_1521, retro_nleu_2118, retro_nleu_2453,
Oryctolagus cuniculus ENSOCUG00000017334 ortholog_many2many 2 retrogenes
retro_ocun_135, retro_ocun_1434,
Pongo abelii ENSPPYG00000002700 ortholog_one2many 1 retrogene
retro_pabe_1906,
Pan troglodytes ENSPTRG00000002992 ortholog_many2many 1 retrogene
retro_ptro_29,
Ictidomys tridecemlineatus ENSSTOG00000002537 ortholog_one2many 2 retrogenes
retro_itri_1098, retro_itri_1753,
Tupaia belangeri ENSTBEG00000011064 ortholog_one2many 5 retrogenes
retro_tbel_3138, retro_tbel_3994, retro_tbel_710, retro_tbel_770, retro_tbel_811,
Tursiops truncatus ENSTTRG00000010878 ortholog_one2many 2 retrogenes
retro_ttru_1703, retro_ttru_881,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_9 95.72 100.00
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2. retro_cfam_219 93.63 97.67
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3. retro_cfam_1322 71.25 90.27
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Download FASTA sequences of all ENSCAFG00000012109 retrocopies