RetrogeneDB ID: | retro_csav_6 | ||
Retrocopylocation | Organism: | Pacific transparent sea squirt (Ciona savignyi) | |
Coordinates: | reftig_37:644056..644671(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCSAVG00000002881 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CSA.4391 | ||
Ensembl ID: | ENSCSAVG00000001209 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.73 % |
Parental protein coverage: | 90.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASVTQPAPDFKGTSVINGEFKEICLKDYLGKYLVLFFYPLDFTFVCPTEIISFSERSGEFEKCDTSVVGV |
A....PAP...GT....GE.K.I.L.DYLGKYLV.FFYPLDFTFVCPTEII.FS.R..EF.K....VV.. | |
Retrocopy | AQISKPAPKWEGTAIVEGEIKTIKLTDYLGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFRKMNVEVVAA |
Parental | SVDSHFSHLAWINTPRKEGGLGPMKIPLLSDLTKSVSKDYGVLLEKAGIALRGLFIIDDKGTIWHASVND |
SVDSHF.HLAW.NT.R.EGGLG...IPLLSDLT...S.DYGVLLE..G..LRGLFIID.KG.......ND | |
Retrocopy | SVDSHFTHLAWLNTRRSEGGLGKLNIPLLSDLTHKISRDYGVLLEDLGHTLRGLFIIDPKGVLRQITMND |
Parental | LPVGRSVDEVLRLVQAFQFVDKHGEVCPASWTPGSKTIKPSIEGSKKYFESSN |
LPVGRSVDE..RLVQAFQ..D.HGEVCPA.W.PG..TI.P......KYF.... | |
Retrocopy | LPVGRSVDETIRLVQAFQHTDEHGEVCPAGWEPGKDTIIPDPKDKLKYFSKTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |