RetrogeneDB ID: | retro_dnov_2373 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_68485:2005..2302(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX3 | ||
Ensembl ID: | ENSDNOG00000001359 | ||
Aliases: | None | ||
Description: | peroxiredoxin 3 [Source:HGNC Symbol;Acc:9354] |
Percent Identity: | 69.9 % |
Parental protein coverage: | 53.37 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NGGLGHMNIALLSDLTKQISRDYGVLLEGAGLALRGLFIIDPNGVIKHLSVNDLSVGRSVEETLRLVKAF |
.GGLGH.NI.LL..L.K.IS..YGVLLEGAGLAL.GLF.IDPNGVIKHLSV....VG.SVE.TL..VKAF | |
Retrocopy | SGGLGHKNITLLLKLNK*IS*GYGVLLEGAGLALKGLFVIDPNGVIKHLSVD---VGPSVEDTLCSVKAF |
Parental | QFVETHGEVCPANWTQILSTIKPNPTASKEYFE |
QF..THGE.C...WT...S...PNPTASKEYFE | |
Retrocopy | QFLGTHGEICVGKWTPD-SLHQPNPTASKEYFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 56 .01 RPM |
SRP012922_cerebellum | 0 .00 RPM | 33 .68 RPM |
SRP012922_heart | 0 .00 RPM | 44 .78 RPM |
SRP012922_kidney | 0 .00 RPM | 82 .69 RPM |
SRP012922_liver | 0 .00 RPM | 53 .41 RPM |
SRP012922_lung | 0 .00 RPM | 19 .40 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 88 .10 RPM |
SRP012922_spleen | 0 .00 RPM | 38 .57 RPM |