RetrogeneDB ID: | retro_mmul_1382 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 19:59054051..59054627(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1876 | ||
Ensembl ID: | ENSMMUG00000008069 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 E3 [Source:RefSeq peptide;Acc:NP_001244500] |
Percent Identity: | 87.24 % |
Parental protein coverage: | 92.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SSGSSDADQRDPAAPEPEEQEERKPSAAQQK-KNTKLSSKTTAKLSTSAKRIQKELAEI-TLDPPPNCSA |
.S...D.D..DPAAPE.EE.EERKPSA.QQK.KNTKLSSKTTAKLSTSAK.IQKELA...TLDP.PNCSA | |
Retrocopy | ASAVADVDKQDPAAPEAEEHEERKPSASQQK>KNTKLSSKTTAKLSTSAKSIQKELAQT>TLDPSPNCSA |
Parental | GPK-GDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN |
GPK.GDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTF..RIYHCNINSQGVICLDILKDN | |
Retrocopy | GPK<GDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFHIRIYHCNINSQGVICLDILKDN |
Parental | WSPALTISKVLLSICSLLTDCNPADPLV-GSIATQYLTNRAEHDRIARQWTKRYAT |
WSPALTISKVLLSICSLLTDCNPADP.V.GSIATQYLTN..EHDRIARQ.TKRY.T | |
Retrocopy | WSPALTISKVLLSICSLLTDCNPADPRV<GSIATQYLTNSTEHDRIARQRTKRYTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 41 .01 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 40 .22 RPM |
SRP007412_cerebellum | 0 .00 RPM | 54 .31 RPM |
SRP007412_heart | 0 .00 RPM | 16 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .29 RPM |
SRP007412_liver | 0 .04 RPM | 9 .26 RPM |
SRP007412_testis | 0 .04 RPM | 15 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014163 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007325 | 3 retrocopies | |
Ciona intestinalis | ENSCING00000006860 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011559 | 3 retrocopies | |
Equus caballus | ENSECAG00000007233 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019324 | 2 retrocopies | |
Homo sapiens | ENSG00000170035 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002410 | 5 retrocopies | |
Macaca mulatta | ENSMMUG00000008069 | 2 retrocopies |
retro_mmul_1382 , retro_mmul_1834,
|
Macaca mulatta | ENSMMUG00000020666 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000010301 | 2 retrocopies | |
Mus musculus | ENSMUSG00000027011 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006290 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014956 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000004544 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009932 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000002281 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000001361 | 1 retrocopy |