Parental gene:

Ube2e3, ENSMUSG00000027011

Aliases:None
Description:ubiquitin-conjugating enzyme E2E 3 [Source:MGI Symbol;Acc:MGI:107412]
Organism:Mouse (Mus musculus)
Coordinates:2:78868123..78921293(+)


>ENSMUSG00000027011
ATGTCCAGTGACAGGCAAAGGTCGGATGATGAGAGCCCTAGCACCAGCAGTGGCAGTTCAGATGCAGATCAGCGAGACCC
TGCCGCTCCAGAGCCCGAGGAACAGGAAGAAAGAAAACCTTCTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCA
AAACGACTGCTAAGTTATCCACTAGTGCTAAAAGAATTCAGAAGGAGCTAGCAGAGATAACCCTTGATCCTCCTCCTAAC
TGCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGGTCAACTATACTTGGTCCACCAGGTTCTGTATATGAAGG
TGGTGTTTTTTTTCTGGATATCACATTTTCTTCAGATTATCCATTTAAGCCACCAAAGGTTACTTTCCGTACCAGAATCT
ATCACTGCAACATCAACAGTCAGGGAGTCATCTGCCTGGATATTCTGAAAGACAACTGGAGTCCTGCTTTGACTATTTCA
AAGGTTTTGCTCTCTATTTGTTCCCTTTTGACAGATTGCAACCCTGCGGATCCTCTGGTCGGAAGCATAGCCACTCAGTA
TTTGACCAACAGAGCAGAACATGACAGGATAGCCAGACAGTGGACCAAGAGATACGCAACATAA

Library Parental gene expression (RPM)
SRP007412_brain 51 .33 RPM
SRP007412_cerebellum 43 .33 RPM
SRP007412_heart 28 .61 RPM
SRP007412_kidney 26 .72 RPM
SRP007412_liver 16 .85 RPM
SRP007412_testis 19 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014163 ortholog_one2one 3 retrogenes
retro_cfam_2076, retro_cfam_2161, retro_cfam_27,
Choloepus hoffmanni ENSCHOG00000007325 ortholog_one2one 3 retrogenes
retro_chof_1756, retro_chof_2077, retro_chof_2358,
Ciona intestinalis ENSCING00000006860 ortholog_one2many 1 retrogene
retro_cint_33,
Callithrix jacchus ENSCJAG00000011559 ortholog_one2many 3 retrogenes
retro_cjac_3194, retro_cjac_3911, retro_cjac_3967,
Equus caballus ENSECAG00000007233 ortholog_one2one 1 retrogene
retro_ecab_196,
Echinops telfairi ENSETEG00000019324 ortholog_one2one 2 retrogenes
retro_etel_314, retro_etel_848,
Homo sapiens ENSG00000170035 ortholog_one2one 1 retrogene
retro_hsap_4653,
Macaca mulatta ENSMMUG00000008069 ortholog_one2one 2 retrogenes
retro_mmul_1382, retro_mmul_1834,
Monodelphis domestica ENSMODG00000010301 ortholog_one2one 2 retrogenes
retro_mdom_1679, retro_mdom_1688,
Mus musculus ENSMUSG00000019927 other_paralog 22 retrogenes
retro_mmus_3405, retro_mmus_3406, retro_mmus_3407, retro_mmus_3409, retro_mmus_3430, retro_mmus_3432, retro_mmus_3434, retro_mmus_3435, retro_mmus_3436, retro_mmus_3563, retro_mmus_3564, retro_mmus_3565, retro_mmus_3566, retro_mmus_3567, retro_mmus_3587, retro_mmus_3589, retro_mmus_3590, retro_mmus_3591, retro_mmus_3592, retro_mmus_3593, retro_mmus_3594, retro_mmus_3595,
Mus musculus ENSMUSG00000021774 within_species_paralog 3 retrogenes
retro_mmus_2493, retro_mmus_2600, retro_mmus_537,
Mus musculus ENSMUSG00000038965 other_paralog 10 retrogenes
retro_mmus_1619, retro_mmus_1620, retro_mmus_2147, retro_mmus_2212, retro_mmus_2272, retro_mmus_2315, retro_mmus_3205, retro_mmus_3714, retro_mmus_541, retro_mmus_995,
Mus musculus ENSMUSG00000078578 other_paralog 11 retrogenes
retro_mmus_1818, retro_mmus_1895, retro_mmus_1913, retro_mmus_2293, retro_mmus_2635, retro_mmus_2643, retro_mmus_3119, retro_mmus_3636, retro_mmus_850, retro_mmus_875, retro_mmus_923,
Mus musculus ENSMUSG00000091896 other_paralog 3 retrogenes
retro_mmus_2267, retro_mmus_27, retro_mmus_629,
Nomascus leucogenys ENSNLEG00000006290 ortholog_one2one 1 retrogene
retro_nleu_2068,
Otolemur garnettii ENSOGAG00000014956 ortholog_one2one 4 retrogenes
retro_ogar_1343, retro_ogar_2512, retro_ogar_2682, retro_ogar_3443,
Pongo abelii ENSPPYG00000012987 ortholog_one2one 1 retrogene
retro_pabe_3614,
Rattus norvegicus ENSRNOG00000004544 ortholog_one2one 1 retrogene
retro_rnor_1236,
Tupaia belangeri ENSTBEG00000009932 ortholog_one2one 2 retrogenes
retro_tbel_1986, retro_tbel_3294,
Tarsius syrichta ENSTSYG00000002281 ortholog_one2one 5 retrogenes
retro_tsyr_1393, retro_tsyr_1809, retro_tsyr_1842, retro_tsyr_1942, retro_tsyr_457,
Tursiops truncatus ENSTTRG00000001361 ortholog_one2one 1 retrogene
retro_ttru_1056,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2814 87.05 92.75
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2. retro_mmus_3123 76.35 70.05
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3. retro_mmus_3416 77.12 56.04
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4. retro_mmus_3571 77.12 56.04
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Download FASTA sequences of all ENSMUSG00000027011 retrocopies