RetrogeneDB ID:

retro_ogar_3443

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873840.1:448706..449283(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2E3
Ensembl ID:ENSOGAG00000014956
Aliases:None
Description:ubiquitin-conjugating enzyme E2E 3 [Source:HGNC Symbol;Acc:12479]


Retrocopy-Parental alignment summary:






>retro_ogar_3443
ATGTCAAGCGATAGGCAAAGGTCAGATGATGAGAGCCTCAGCACCAGCAGTGGCAGTTCAGATGTGGACCAGCGAGACCC
AGCCACTCCAGAGTCTGAAGAACAAGAAGAAAGAACGCCTTCTGCCACCCAACAGAAGAAAAACACCAAACTCTCTAGGA
AAACCACTGCTAAGTTATCCACTAGTGCTAAAAGAATTCAGAAGGAGCTAGCTGAAATAACTCTCCATCCTCTTCCTAAC
TGCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCGACTATACTTGGTCCACCAGGTTCTGTTTATGAAGG
TGGTGTGTTTTTTCTGGATAACACATTTTCATTGGATTATCCATTTAAGCCACCAAAGGTTACTTTCCGTACCAGAATCT
ATCACTGCAACATCAACAGTCAGTAGTCATCTGTATAGACATCCTTAAAGACAACTGGAGTCCTGCCTTGACTTTTTCAA
AGGTTTTTCTGTCTATTTATTCTCTTTTGACAGACTGAAACCCTGTGGATCCTCTGGTTGGAAGCATAGCCAACAGTATT
TGACCAACAGAGCAGAA

ORF - retro_ogar_3443 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.74 %
Parental protein coverage: 93.24 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKEL
MSSDRQRSDDES.STSSGSSD.DQRDPA.PE.EEQEER.PSATQQKKNTKLS.KTTAKLSTSAKRIQKEL
RetrocopyMSSDRQRSDDESLSTSSGSSDVDQRDPATPESEEQEERTPSATQQKKNTKLSRKTTAKLSTSAKRIQKEL
ParentalAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINS
AEITL.P.PNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLD.TFS.DYPFKPPKVTFRTRIYHCNINS
RetrocopyAEITLHPLPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDNTFSLDYPFKPPKVTFRTRIYHCNINS
ParentalQ-GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT-QYLTNRAE
Q..VIC.DILKDNWSPALT.SKV.LSI.SLLTD.NP.DPLVGSIA..QYLTNRAE
RetrocopyQ<VVICIDILKDNWSPALTFSKVFLSIYSLLTD*NPVDPLVGSIAN<QYLTNRAE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3443 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 46 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000141633 retrocopies
Choloepus hoffmanni ENSCHOG000000073253 retrocopies
Ciona intestinalis ENSCING000000068601 retrocopy
Callithrix jacchus ENSCJAG000000115593 retrocopies
Equus caballus ENSECAG000000072331 retrocopy
Echinops telfairi ENSETEG000000193242 retrocopies
Homo sapiens ENSG000001700351 retrocopy
Macaca mulatta ENSMMUG000000080692 retrocopies
Monodelphis domestica ENSMODG000000103012 retrocopies
Mus musculus ENSMUSG000000270114 retrocopies
Nomascus leucogenys ENSNLEG000000062901 retrocopy
Otolemur garnettii ENSOGAG000000075273 retrocopies
Otolemur garnettii ENSOGAG000000128606 retrocopies
Otolemur garnettii ENSOGAG00000014956 4 retrocopies
Pongo abelii ENSPPYG000000129871 retrocopy
Rattus norvegicus ENSRNOG000000045441 retrocopy
Tupaia belangeri ENSTBEG000000099322 retrocopies
Tarsius syrichta ENSTSYG000000022815 retrocopies
Tursiops truncatus ENSTTRG000000013611 retrocopy



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