Parental gene:

UBE2E3, ENSCAFG00000014163

Aliases:None
Description:ubiquitin-conjugating enzyme E2E 3 [Source:HGNC Symbol;Acc:12479]
Organism:Dog (Canis familiaris)
Coordinates:36:24201065..24286232(+)


>ENSCAFG00000014163
ATGTCCAGTGATAGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGGAGTTCAGATGCAGACCAGCGGGACCC
CGCCGCCCCAGAGCCCGAAGAGCAAGAGGAAAGAAAACCTTCTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCA
AAACCACTGCTAAGTTATCCACTAGTGCTAAAAGAATTCAGAAGGAGCTAGCCGAAATAACTCTTGATCCTCCTCCTAAC
TGCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCGACTATACTTGGTCCACCAGGTTCTGTATATGAAGG
TGGTGTGTTTTTTCTGGATATCACTTTTTCATCTGATTATCCATTTAAGCCACCAAAGGTTACTTTCCGCACCAGAATCT
ATCATTGCAACATCAACAGTCAGGGAGTCATCTGTCTGGACATCCTTAAAGACAACTGGAGTCCTGCTTTGACTATTTCA
AAGGTTTTGCTGTCGATTTGTTCTCTTTTGACAGATTGCAACCCTGCGGATCCTCTGGTTGGAAGCATAGCCACTCAGTA
TTTGACCAACAGAGCAGAACATGACAGGATAGCCAGACAGTGGACCAAGAGATACGCCACATAA

Library Parental gene expression (RPM)
SRP017611_brain 61 .53 RPM
SRP017611_kidney 54 .08 RPM
SRP017611_liver 20 .45 RPM
SRP012049_cerebellum 159 .30 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000015284 other_paralog 1 retrogene
retro_cfam_1090,
Canis familiaris ENSCAFG00000031041 other_paralog 5 retrogenes
retro_cfam_1191, retro_cfam_1439, retro_cfam_1602, retro_cfam_2034, retro_cfam_785,
Choloepus hoffmanni ENSCHOG00000007325 ortholog_one2one 3 retrogenes
retro_chof_1756, retro_chof_2077, retro_chof_2358,
Ciona intestinalis ENSCING00000006860 ortholog_one2many 1 retrogene
retro_cint_33,
Callithrix jacchus ENSCJAG00000011559 ortholog_one2many 3 retrogenes
retro_cjac_3194, retro_cjac_3911, retro_cjac_3967,
Equus caballus ENSECAG00000007233 ortholog_one2one 1 retrogene
retro_ecab_196,
Echinops telfairi ENSETEG00000019324 ortholog_one2one 2 retrogenes
retro_etel_314, retro_etel_848,
Homo sapiens ENSG00000170035 ortholog_one2one 1 retrogene
retro_hsap_4653,
Macaca mulatta ENSMMUG00000008069 ortholog_one2one 2 retrogenes
retro_mmul_1382, retro_mmul_1834,
Monodelphis domestica ENSMODG00000010301 ortholog_one2one 2 retrogenes
retro_mdom_1679, retro_mdom_1688,
Mus musculus ENSMUSG00000027011 ortholog_one2one 4 retrogenes
retro_mmus_2814, retro_mmus_3123, retro_mmus_3416, retro_mmus_3571,
Nomascus leucogenys ENSNLEG00000006290 ortholog_one2one 1 retrogene
retro_nleu_2068,
Otolemur garnettii ENSOGAG00000014956 ortholog_one2one 4 retrogenes
retro_ogar_1343, retro_ogar_2512, retro_ogar_2682, retro_ogar_3443,
Pongo abelii ENSPPYG00000012987 ortholog_one2one 1 retrogene
retro_pabe_3614,
Rattus norvegicus ENSRNOG00000004544 ortholog_one2one 1 retrogene
retro_rnor_1236,
Tupaia belangeri ENSTBEG00000009932 ortholog_one2one 2 retrogenes
retro_tbel_1986, retro_tbel_3294,
Tarsius syrichta ENSTSYG00000002281 ortholog_one2one 5 retrogenes
retro_tsyr_1393, retro_tsyr_1809, retro_tsyr_1842, retro_tsyr_1942, retro_tsyr_457,
Tursiops truncatus ENSTTRG00000001361 ortholog_one2one 1 retrogene
retro_ttru_1056,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_27 83.09 100.00
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2. retro_cfam_2076 87.98 100.00
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3. retro_cfam_2161 87.98 100.00
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Download FASTA sequences of all ENSCAFG00000014163 retrocopies