RetrogeneDB ID:

retro_etel_848

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_174845:2558..2852(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000011768
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2E3
Ensembl ID:ENSETEG00000019324
Aliases:None
Description:ubiquitin-conjugating enzyme E2E 3 [Source:HGNC Symbol;Acc:12479]


Retrocopy-Parental alignment summary:






>retro_etel_848
GAAGGTGGGGTGTGTGCTTCCAGATCTCGCATTGTCATCAGATGATCCATTAGGCCATCAAAGGCTCCTTTCCATACCAG
TTCTATCACTGCCACGTCCACAGTCAGGGAGGCATCCTTAAAGATGACCGGAGTCCTGCTTTGACGGTTTCAAAGCTCTT
GCTGTCTGTTTGTTCCCCTGTGACAGACTGCAACCCTCTGGGTCTTCTGGTTGGAAGCAGGGCCACTCAGTATTTGACCA
ACAGAGCAGAACATGGCAGGATAGCCAGACAAGTGGACCAAGAGATGCGGAACA

ORF - retro_etel_848 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.32 %
Parental protein coverage: 71.83 %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalEGGV-FFLDITFSSDYPF-KPPKVTFRT-RIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTD
EGGV....D...SSD.P...P.K..F.T...YHC...SQG.....ILKD..SPALT.SK.LLS.CS..TD
RetrocopyEGGV>VLPDLALSSDDPL<RPSKAPFHT<QFYHCHVHSQG----GILKDDRSPALTVSKLLLSVCSPVTD
ParentalCNPADPLVGSIATQYLTNRAEHDRIARQ-WTKRYAT
CNP...LVGS.ATQYLTNRAEH.RIARQ.WTKR..T
RetrocopyCNPLGLLVGSRATQYLTNRAEHGRIARQ>WTKRCGT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_848 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 42 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000141633 retrocopies
Choloepus hoffmanni ENSCHOG000000073253 retrocopies
Ciona intestinalis ENSCING000000068601 retrocopy
Callithrix jacchus ENSCJAG000000115593 retrocopies
Equus caballus ENSECAG000000072331 retrocopy
Echinops telfairi ENSETEG000000012913 retrocopies
Echinops telfairi ENSETEG000000022802 retrocopies
Echinops telfairi ENSETEG00000019324 2 retrocopies
retro_etel_314, retro_etel_848 ,
Homo sapiens ENSG000001700351 retrocopy
Macaca mulatta ENSMMUG000000080692 retrocopies
Monodelphis domestica ENSMODG000000103012 retrocopies
Mus musculus ENSMUSG000000270114 retrocopies
Nomascus leucogenys ENSNLEG000000062901 retrocopy
Otolemur garnettii ENSOGAG000000149564 retrocopies
Pongo abelii ENSPPYG000000129871 retrocopy
Rattus norvegicus ENSRNOG000000045441 retrocopy
Tupaia belangeri ENSTBEG000000099322 retrocopies
Tarsius syrichta ENSTSYG000000022815 retrocopies
Tursiops truncatus ENSTTRG000000013611 retrocopy



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