Parental gene:

ENSCJAG00000011559

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:37465987..37548882(-)


>ENSCJAG00000011559
ATGTCCAGTGATAGGCAAAGGTCCGATGATGAGAGCCCCAGCACCAGCAGTGGCAGTTCAGATGCGGACCAGCGAGACCC
AGCCGCTCCAGAGCCTGAAGAACAAGAAGAAAGAAAACCTTCTGCCACCCAGCAGAAGAAAAACACCAAACTCTCTAGCA
AAACCACTGCTAAGTTATCCACTAGTGCTAAAAGAATTCAAAAGGAGCTAGCTGAAATAACCCTTGATCCTCCTCCTAAT
TGCAGTGCTGGGCCTAAAGGAGATAACATTTATGAATGGAGATCAACTATACTTGGTCCACCGGGTTCTGTATATGAAGG
TGGTGTGTTTTTTCTGGATATCACATTTTCATCAGATTATCCATTTAAGCCACCAAAGGTTACTTTCCGCACCAGGATCT
ATCACTGCAACATCAACAGTCAGGGAGTCATCTGTCTGGACATCCTTAAAGACAACTGGAGTCCCGCTTTGACTATTTCA
AAGGTTTTGCTGTCTATTTGTTCCCTTTTGACAGACTGCAACCCTGCGGATCCTCTGGTTGGAAGCATAGCCACTCAGTA
TTTGACCAACAGAGCAGAACACGACAGGATAGCCAGACAGTGGACCAAGAGATACGCAACATAA

Library Parental gene expression (RPM)
SRP051959_spleen 6 .83 RPM
SRP051959_skeletal_muscle 6 .92 RPM
SRP051959_lymph_node 5 .07 RPM
SRP051959_lung 5 .61 RPM
SRP051959_liver 3 .86 RPM
SRP051959_kidney 7 .28 RPM
SRP051959_heart 7 .81 RPM
SRP051959_colon 5 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000014163 ortholog_one2many 3 retrogenes
retro_cfam_2076, retro_cfam_2161, retro_cfam_27,
Choloepus hoffmanni ENSCHOG00000007325 ortholog_one2many 3 retrogenes
retro_chof_1756, retro_chof_2077, retro_chof_2358,
Ciona intestinalis ENSCING00000006860 ortholog_one2many 1 retrogene
retro_cint_33,
Callithrix jacchus ENSCJAG00000007875 other_paralog 4 retrogenes
retro_cjac_1660, retro_cjac_3666, retro_cjac_3882, retro_cjac_925,
Callithrix jacchus ENSCJAG00000015492 other_paralog 3 retrogenes
retro_cjac_512, retro_cjac_657, retro_cjac_791,
Callithrix jacchus ENSCJAG00000015818 other_paralog 9 retrogenes
retro_cjac_1813, retro_cjac_1815, retro_cjac_1998, retro_cjac_2073, retro_cjac_2511, retro_cjac_2576, retro_cjac_2856, retro_cjac_3174, retro_cjac_3296,
Equus caballus ENSECAG00000007233 ortholog_one2many 1 retrogene
retro_ecab_196,
Echinops telfairi ENSETEG00000019324 ortholog_one2many 2 retrogenes
retro_etel_314, retro_etel_848,
Homo sapiens ENSG00000170035 possible_ortholog 1 retrogene
retro_hsap_4653,
Macaca mulatta ENSMMUG00000008069 possible_ortholog 2 retrogenes
retro_mmul_1382, retro_mmul_1834,
Monodelphis domestica ENSMODG00000010301 ortholog_one2many 2 retrogenes
retro_mdom_1679, retro_mdom_1688,
Mus musculus ENSMUSG00000027011 ortholog_one2many 4 retrogenes
retro_mmus_2814, retro_mmus_3123, retro_mmus_3416, retro_mmus_3571,
Nomascus leucogenys ENSNLEG00000006290 possible_ortholog 1 retrogene
retro_nleu_2068,
Otolemur garnettii ENSOGAG00000014956 ortholog_one2many 4 retrogenes
retro_ogar_1343, retro_ogar_2512, retro_ogar_2682, retro_ogar_3443,
Pongo abelii ENSPPYG00000012987 ortholog_one2one 1 retrogene
retro_pabe_3614,
Rattus norvegicus ENSRNOG00000004544 ortholog_one2many 1 retrogene
retro_rnor_1236,
Tupaia belangeri ENSTBEG00000009932 ortholog_one2many 2 retrogenes
retro_tbel_1986, retro_tbel_3294,
Tarsius syrichta ENSTSYG00000002281 ortholog_one2many 5 retrogenes
retro_tsyr_1393, retro_tsyr_1809, retro_tsyr_1842, retro_tsyr_1942, retro_tsyr_457,
Tursiops truncatus ENSTTRG00000001361 ortholog_one2many 1 retrogene
retro_ttru_1056,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3194 87.05 66.67
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2. retro_cjac_3911 89.81 74.88
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3. retro_cjac_3967 90.82 100.00
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Download FASTA sequences of all ENSCJAG00000011559 retrocopies