RetrogeneDB ID: | retro_mmul_574 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:201372006..201372428(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000023201 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PFN1 | ||
Ensembl ID: | ENSMMUG00000002772 | ||
Aliases: | PFN1, profilin-1 | ||
Description: | Profilin [Source:UniProtKB/TrEMBL;Acc:F7H2A5] |
Percent Identity: | 69.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAGW-NAYIDNLMAD--GTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYVNGLTLG |
M.GW..AYIDNLMA.....CQDAAI.GYKDSPS.WAA...KTF..ITPAE..VL.GKDRSS..VNGLTLG | |
Retrocopy | MDGW<DAYIDNLMAEVPSVCQDAAIMGYKDSPSIWAAISWKTFASITPAEASVLAGKDRSSVFVNGLTLG |
Parental | GQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRR |
GQKCSVIRDSLLQDGEF.MDL........P...........TLVLLMGKE.VHGGLINKKCYEM.SH..R | |
Retrocopy | GQKCSVIRDSLLQDGEFCMDLSIPRVPVEPPLSMSLSPR-LTLVLLMGKESVHGGLINKKCYEMTSHFWR |
Parental | SQY |
SQY | |
Retrocopy | SQY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 35 .07 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 67 .43 RPM |
SRP007412_cerebellum | 0 .13 RPM | 29 .12 RPM |
SRP007412_heart | 0 .00 RPM | 90 .62 RPM |
SRP007412_kidney | 0 .00 RPM | 116 .31 RPM |
SRP007412_liver | 0 .00 RPM | 304 .16 RPM |
SRP007412_testis | 0 .04 RPM | 35 .43 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_1641 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006193 | 2 retrocopies | |
Bos taurus | ENSBTAG00000004915 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011719 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000013136 | 1 retrocopy | |
Equus caballus | ENSECAG00000021116 | 3 retrocopies | |
Homo sapiens | ENSG00000108518 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000022394 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002772 | 5 retrocopies | |
Mus musculus | ENSMUSG00000018293 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017446 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000031395 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000000291 | 1 retrocopy | |
Pelodiscus sinensis | ENSPSIG00000004124 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008616 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000003975 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017905 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000028950 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001299 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005327 | 3 retrocopies |