Parental gene: | PFN1, ENSG00000108518 |
| Aliases: | PFN1, ALS18 |
| Description: | profilin 1 [Source:HGNC Symbol;Acc:8881] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 17:4848946..4852356(-) |
>ENSG00000108518
ATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGCTACAAGGA
CTCGCCCTCCGTCTGGGCCGCCGTCCCCGGGAAAACGTTCGTCAACATCACGCCAGCTGAGGTGGGTGTCCTGGTTGGCA
AAGACCGGTCAAGTTTTTACGTGAATGGGCTGACACTTGGGGGCCAGAAATGTTCGGTGATCCGGGACTCACTGCTGCAG
GATGGGGAATTTAGCATGGATCTTCGTACCAAGAGCACCGGTGGGGCCCCCACCTTCAATGTCACTGTCACCAAGACTGA
CAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCC
ACCTTCGGCGTTCCCAGTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_adipose | 337 .55 RPM |
| bodymap2_adrenal | 548 .44 RPM |
| bodymap2_brain | 78 .20 RPM |
| bodymap2_breast | 232 .32 RPM |
| bodymap2_colon | 381 .67 RPM |
| bodymap2_heart | 82 .54 RPM |
| bodymap2_kidney | 230 .30 RPM |
| bodymap2_liver | 224 .00 RPM |
| bodymap2_lung | 363 .01 RPM |
| bodymap2_lymph_node | 391 .06 RPM |
| bodymap2_ovary | 213 .76 RPM |
| bodymap2_prostate | 385 .65 RPM |
| bodymap2_skeletal_muscle | 163 .65 RPM |
| bodymap2_testis | 200 .07 RPM |
| bodymap2_thyroid | 167 .90 RPM |
| bodymap2_white_blood_cells | 932 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006193 | possible_ortholog | 2 retrogenes | |
| Bos taurus | ENSBTAG00000004915 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011719 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000013136 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000021116 | ortholog_one2many | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022394 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000002772 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000018293 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017446 | ortholog_one2many | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031395 | ortholog_one2one | 3 retrogenes | |
| Procavia capensis | ENSPCAG00000000291 | ortholog_one2one | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000004124 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000008616 | ortholog_one2one | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000003975 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000017905 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000028950 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000001299 | ortholog_one2many | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000005327 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_214 | 76.92 | 83.57 | Please wait, loading  |
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| 2. | retro_hsap_215 | 75.19 | 95.00 | Please wait, loading |
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| 3. | retro_hsap_221 | 75.19 | 95.00 | Please wait, loading |
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| 4. | retro_hsap_223 | 76.69 | 95.00 | Please wait, loading |
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| 5. | retro_hsap_224 | 65.85 | 86.43 | Please wait, loading |
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| 6. | retro_hsap_352 | 75.36 | 97.14 | Please wait, loading |
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| 7. | retro_hsap_446 | 76.69 | 95.00 | Please wait, loading |
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| 8. | retro_hsap_447 | 73.68 | 95.00 | Please wait, loading |
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| 9. | retro_hsap_450 | 74.44 | 95.00 | Please wait, loading |
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| 10. | retro_hsap_451 | 74.44 | 95.00 | Please wait, loading |
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Download FASTA sequences of all ENSG00000108518 retrocopies