Parental gene: | PFN1, ENSPTRG00000008616 |
| Aliases: | None |
| Description: | profilin 1 [Source:HGNC Symbol;Acc:8881] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 17:4972247..4974946(-) |
>ENSPTRG00000008616
CTCATGGCGGACAGGACCTGTCAGGACGCGGCCCTCCTGGGCTACAAGGACTCGCCCTCCGTCTGGGCCGGCGTCCCCGG
GAAAACCTTCGTCAACATCACGCCAGCTGAGGTGGGTGTCCTGGTTGGCAAAGACCGGTCAAGTTTTTACGTGAATGGGC
TGACACTTGGGGGCCAGAAATGTTCGGTGATCCGGGACTCACTGCTGCAGGATGGGGAATTTAGCATGGATCTTCGTACC
AAGAGCACCGGTGGGGCCCCCACCTTCAATGTCACTGTCACCAAGACTGACAAGACGCTAGTCCTGCTGATGGGCAAAGA
AGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCCACCTTCGGCGTTCCCAGTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 85 .21 RPM |
| SRP007412_cerebellum | 113 .21 RPM |
| SRP007412_heart | 105 .01 RPM |
| SRP007412_kidney | 290 .99 RPM |
| SRP007412_liver | 606 .30 RPM |
| SRP007412_testis | 52 .16 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000006193 | possible_ortholog | 2 retrogenes | |
| Bos taurus | ENSBTAG00000004915 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011719 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000013136 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000021116 | ortholog_one2many | 3 retrogenes | |
| Homo sapiens | ENSG00000108518 | ortholog_one2one | 10 retrogenes | |
| Gorilla gorilla | ENSGGOG00000022394 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000002772 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000018293 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017446 | ortholog_one2many | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031395 | ortholog_one2one | 3 retrogenes | |
| Procavia capensis | ENSPCAG00000000291 | ortholog_one2one | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000004124 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000003975 | ortholog_one2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000017905 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000028950 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000001299 | ortholog_one2many | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000005327 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_185 | 75.38 | 100.00 | Please wait, loading  |
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| 2. | retro_ptro_196 | 67.86 | 85.38 | Please wait, loading |
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| 3. | retro_ptro_276 | 74.24 | 100.00 | Please wait, loading |
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| 4. | retro_ptro_332 | 73.85 | 100.00 | Please wait, loading |
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| 5. | retro_ptro_333 | 76.58 | 85.38 | Please wait, loading |
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Download FASTA sequences of all ENSPTRG00000008616 retrocopies