Parental gene:

Pfn1, ENSRNOG00000003975

Aliases:None
Description:Profilin-1 [Source:UniProtKB/Swiss-Prot;Acc:P62963]
Organism:Rat (Rattus norvegicus)
Coordinates:10:57018595..57021336(-)


>ENSRNOG00000003975
ATGGCCGGGTGGAACGCCTACATCGACAGCCTTATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTAGGCTACAAGGA
CTCGCCCTCCGTCTGGGCCGCTGTCCCCGGGAAGACCTTCGTTAGCATTACGCCAGCTGAGGTTGGTGTCCTGGTAGGCA
AAGACCGGTCAAGTTTTTTCGTGAATGGGCTGACACTTGGGGGCCAGAAATGTTCTGTGATCCGGGACTCACTGCTGCAA
GACGGGGAATTTACAATGGATCTTCGTACCAAGAGCACCGGGGGAGCCCCCACCTTCAATGTCACTGTCACCATGACTGC
CAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCTC
ACCTGCGGCGTTCCCAGTACTGA

Library Parental gene expression (RPM)
SRP017611_brain 72 .62 RPM
SRP017611_kidney 160 .08 RPM
SRP017611_liver 96 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006193 possible_ortholog 2 retrogenes
retro_amel_1712, retro_amel_1781,
Bos taurus ENSBTAG00000004915 ortholog_many2many 1 retrogene
retro_btau_141,
Callithrix jacchus ENSCJAG00000011719 ortholog_one2many 2 retrogenes
retro_cjac_1023, retro_cjac_1641,
Cavia porcellus ENSCPOG00000013136 ortholog_one2many 1 retrogene
retro_cpor_1216,
Dasypus novemcinctus ENSDNOG00000011649 possible_ortholog 2 retrogenes
retro_dnov_1762, retro_dnov_485,
Equus caballus ENSECAG00000021116 ortholog_many2many 3 retrogenes
retro_ecab_171, retro_ecab_28, retro_ecab_559,
Homo sapiens ENSG00000108518 ortholog_one2many 10 retrogenes
retro_hsap_214, retro_hsap_215, retro_hsap_221, retro_hsap_223, retro_hsap_224, retro_hsap_352, retro_hsap_446, retro_hsap_447, retro_hsap_450, retro_hsap_451,
Gorilla gorilla ENSGGOG00000022394 ortholog_one2many 3 retrogenes
retro_ggor_285, retro_ggor_289, retro_ggor_366,
Macaca mulatta ENSMMUG00000002772 ortholog_one2many 5 retrogenes
retro_mmul_407, retro_mmul_527, retro_mmul_528, retro_mmul_574, retro_mmul_732,
Mus musculus ENSMUSG00000018293 ortholog_one2one 1 retrogene
retro_mmus_1326,
Nomascus leucogenys ENSNLEG00000017446 ortholog_many2many 6 retrogenes
retro_nleu_16, retro_nleu_1870, retro_nleu_2425, retro_nleu_2429, retro_nleu_848, retro_nleu_886,
Otolemur garnettii ENSOGAG00000031395 ortholog_one2many 3 retrogenes
retro_ogar_1680, retro_ogar_2143, retro_ogar_3351,
Procavia capensis ENSPCAG00000000291 ortholog_one2many 1 retrogene
retro_pcap_27,
Pelodiscus sinensis ENSPSIG00000004124 ortholog_one2many 1 retrogene
retro_psin_8,
Pan troglodytes ENSPTRG00000008616 ortholog_one2many 5 retrogenes
retro_ptro_185, retro_ptro_196, retro_ptro_276, retro_ptro_332, retro_ptro_333,
Sus scrofa ENSSSCG00000017905 ortholog_one2many 1 retrogene
retro_sscr_275,
Ictidomys tridecemlineatus ENSSTOG00000028950 possible_ortholog 1 retrogene
retro_itri_129,
Tursiops truncatus ENSTTRG00000001299 ortholog_many2many 1 retrogene
retro_ttru_14,
Vicugna pacos ENSVPAG00000005327 ortholog_one2many 3 retrogenes
retro_vpac_389, retro_vpac_395, retro_vpac_457,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1623 73.87 79.29
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Download FASTA sequences of all ENSRNOG00000003975 retrocopies