Parental gene:

PFN1, ENSCJAG00000011719

Aliases:LOC100395089, PFN1, profilin-1
Description:profilin 1 [Source:HGNC Symbol;Acc:8881]
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:97092725..97096009(-)


>ENSCJAG00000011719
ATGGCCGGGTGGAACGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCGGCCATCGTGGGATACAAGGA
CTCGCCCTCCGTCTGGGCCGCCGTCCCTGGGAAAACCTTCGTCAACATCACGCCAGCTGAGGTTGGTGTCCTGGTTGGCA
AAGACCGGTCAAGTTTTTATGTGAATGGGCTGACACTTGGGGGCCAGAAATGTTCGGTTATCCGGGACTCACTGCTGCAG
GATGGGGAATTTAGCATGGATCTTCGTACCAAGAGCACCGGTGGAGCCCCCACCTTCAATGTCACTGTCACCAAGACTGA
CAAGACGCTAGTCCTGCTGATGGGCAAAGAAGGTGTCCACGGTGGTTTGATCAACAAGAAATGTTATGAAATGGCCTCCC
ACCTTCGGCGTGCCCAGTACTGA

Library Parental gene expression (RPM)
SRP051959_colon 86 .64 RPM
SRP051959_heart 34 .89 RPM
SRP051959_kidney 48 .59 RPM
SRP051959_liver 49 .21 RPM
SRP051959_lung 76 .42 RPM
SRP051959_lymph_node 129 .77 RPM
SRP051959_skeletal_muscle 34 .53 RPM
SRP051959_spleen 83 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006193 possible_ortholog 2 retrogenes
retro_amel_1712, retro_amel_1781,
Bos taurus ENSBTAG00000004915 ortholog_one2many 1 retrogene
retro_btau_141,
Callithrix jacchus ENSCJAG00000001271 within_species_paralog 1 retrogene
retro_cjac_4029,
Cavia porcellus ENSCPOG00000013136 ortholog_one2one 1 retrogene
retro_cpor_1216,
Equus caballus ENSECAG00000021116 ortholog_one2many 3 retrogenes
retro_ecab_171, retro_ecab_28, retro_ecab_559,
Homo sapiens ENSG00000108518 ortholog_one2one 10 retrogenes
retro_hsap_214, retro_hsap_215, retro_hsap_221, retro_hsap_223, retro_hsap_224, retro_hsap_352, retro_hsap_446, retro_hsap_447, retro_hsap_450, retro_hsap_451,
Gorilla gorilla ENSGGOG00000022394 ortholog_one2one 3 retrogenes
retro_ggor_285, retro_ggor_289, retro_ggor_366,
Macaca mulatta ENSMMUG00000002772 ortholog_one2one 5 retrogenes
retro_mmul_407, retro_mmul_527, retro_mmul_528, retro_mmul_574, retro_mmul_732,
Mus musculus ENSMUSG00000018293 ortholog_one2one 1 retrogene
retro_mmus_1326,
Nomascus leucogenys ENSNLEG00000017446 ortholog_one2many 6 retrogenes
retro_nleu_16, retro_nleu_1870, retro_nleu_2425, retro_nleu_2429, retro_nleu_848, retro_nleu_886,
Otolemur garnettii ENSOGAG00000031395 ortholog_one2one 3 retrogenes
retro_ogar_1680, retro_ogar_2143, retro_ogar_3351,
Procavia capensis ENSPCAG00000000291 ortholog_one2one 1 retrogene
retro_pcap_27,
Pelodiscus sinensis ENSPSIG00000004124 ortholog_one2one 1 retrogene
retro_psin_8,
Pan troglodytes ENSPTRG00000008616 ortholog_one2one 5 retrogenes
retro_ptro_185, retro_ptro_196, retro_ptro_276, retro_ptro_332, retro_ptro_333,
Rattus norvegicus ENSRNOG00000003975 ortholog_one2many 1 retrogene
retro_rnor_1623,
Sus scrofa ENSSSCG00000017905 ortholog_one2one 1 retrogene
retro_sscr_275,
Ictidomys tridecemlineatus ENSSTOG00000028950 ortholog_one2one 1 retrogene
retro_itri_129,
Tursiops truncatus ENSTTRG00000001299 ortholog_one2many 1 retrogene
retro_ttru_14,
Vicugna pacos ENSVPAG00000005327 ortholog_one2one 3 retrogenes
retro_vpac_389, retro_vpac_395, retro_vpac_457,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1023 78.29 90.00
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2. retro_cjac_1641 83.93 79.29
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Download FASTA sequences of all ENSCJAG00000011719 retrocopies