RetrogeneDB ID: | retro_mmul_922 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:63248889..63250064(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000031311 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.18258 | ||
Ensembl ID: | ENSMMUG00000021233 | ||
Aliases: | None | ||
Description: | selenide, water dikinase 1 [Source:RefSeq peptide;Acc:NP_001177347] |
Percent Identity: | 89.31 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAVMPRLGIGMDT |
M.TRESFNPESYELD.SF.LTR.TE.KGTG.KV.QDVLQKLL.SLQ.NHFQED.QFLGAVMPRL.I.MDT | |
Retrocopy | MCTRESFNPESYELDRSFWLTRLTEMKGTGWKVSQDVLQKLLKSLQVNHFQEDKQFLGAVMPRLDIRMDT |
Parental | CVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKV |
CVIPLRHGG.SLVQTTDYIYPIV.DPYM.GRIA.A.VLSD.Y..GV.ECDNMLMLLGVSNKMTDRE.DKV | |
Retrocopy | CVIPLRHGGRSLVQTTDYIYPIVEDPYMTGRIASASVLSDVYEVGVMECDNMLMLLGVSNKMTDREGDKV |
Parental | MPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNA-VPGDVLVLTKPLGTQVAV |
MPLI.QGFKDAAEEAGTSVT.GQTVLNPWIVLGGVATTVCQP.EFIMPDNA.VPGDVLVLTKPLGTQVAV | |
Retrocopy | MPLINQGFKDAAEEAGTSVTSGQTVLNPWIVLGGVATTVCQPSEFIMPDNA<VPGDVLVLTKPLGTQVAV |
Parental | AVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLA |
AVHQWLDIPEKWNKIKLV.TQED.ELAYQEAMMNMARLNRTAAGLMHTFNAH.ATDITGFGI.GH.QNLA | |
Retrocopy | AVHQWLDIPEKWNKIKLVFTQEDIELAYQEAMMNMARLNRTAAGLMHTFNAHVATDITGFGIWGHTQNLA |
Parental | KQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGH |
KQQRNE.SFVIHNLPVLAKMA.VSKAC.NMFGLMHGTCPET.G.LLICLPR.QAARFCAEIKSPKYG.GH | |
Retrocopy | KQQRNEGSFVIHNLPVLAKMAVVSKACRNMFGLMHGTCPETTGSLLICLPRQQAARFCAEIKSPKYGKGH |
Parental | QAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPGATS |
QAWIIGIVEKGN.TA.IIDKPRIIEVAPQVA.QNVNPT.GATS | |
Retrocopy | QAWIIGIVEKGNCTASIIDKPRIIEVAPQVAPQNVNPTSGATS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 10 .76 RPM |
SRP007412_brain_prefrontal_cortex | 0 .32 RPM | 19 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 17 .18 RPM |
SRP007412_heart | 0 .00 RPM | 8 .72 RPM |
SRP007412_kidney | 0 .12 RPM | 20 .30 RPM |
SRP007412_liver | 0 .00 RPM | 30 .40 RPM |
SRP007412_testis | 0 .26 RPM | 8 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2196 |
Pan troglodytes | retro_ptro_1669 |
Pongo abelii | retro_pabe_2074 |