RetrogeneDB ID:

retro_mmur_326

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_2416:276160..276463(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:HSPE1
Ensembl ID:ENSMICG00000000148
Aliases:None
Description:heat shock 10kDa protein 1 (chaperonin 10) [Source:HGNC Symbol;Acc:5269]


Retrocopy-Parental alignment summary:






>retro_mmur_326
GCAGGACAAGCATTTAGAAAGTTTCTTCCGCTTTTTGACCGGGTATTGGTTGAAAGGAGTGCAGCCGAAACTGTAACCAA
AGGAGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTGTTGCAAGCAACAGTAGTGGCTGTTGGATCGGGCTCTAAAG
GAAAGGGTGGAGAGATTCAACCAGTTAGTGTGAAAGTTGGAGACAAAGTCCTTCTCCCAGAATATGGAGGCACAAAAGTA
GTTCTAGATGACAAGGATTATTTCTTATTTAGAGATGGTGACATTCTTGGAAAGTATGTGGAC

ORF - retro_mmur_326 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV
AGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV
RetrocopyAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKV
ParentalLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD
LLPEYGGTKVVLDDKDYFLFRDGDILGKYVD
RetrocopyLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_326 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_326 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 88 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001376918 retrocopies
Dasypus novemcinctus ENSDNOG0000001324627 retrocopies
Loxodonta africana ENSLAFG000000000571 retrocopy
Microcebus murinus ENSMICG00000000148 12 retrocopies
Otolemur garnettii ENSOGAG0000003443424 retrocopies
Rattus norvegicus ENSRNOG000000148686 retrocopies



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