RetrogeneDB ID: | retro_rnor_1320 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:70310109..70310413(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspe1 | ||
Ensembl ID: | ENSRNOG00000014868 | ||
Aliases: | Hspe1, Cpn10 | ||
Description: | 10 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P26772] |
Percent Identity: | 86.27 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGGKGKGGEIQPVSVKVGDK- |
.GQ.FRKFLPLF.RVLVERSAAETVT.GGI.LPEKSQGK.LQATVVAVGSGGKGKGGEIQPVSVKVG... | |
Retrocopy | SGQTFRKFLPLFVRVLVERSAAETVTEGGITLPEKSQGKLLQATVVAVGSGGKGKGGEIQPVSVKVGER> |
Parental | VLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
..LPEYG.TKVVLD.KD.FLFRDGDILGKYVD | |
Retrocopy | KVLPEYGVTKVVLDSKDCFLFRDGDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .34 RPM |
SRP017611_kidney | 0 .00 RPM | 113 .47 RPM |
SRP017611_liver | 0 .00 RPM | 45 .72 RPM |