RetrogeneDB ID: | retro_rnor_1094 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 15:22477416..22477668(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspe1 | ||
Ensembl ID: | ENSRNOG00000014868 | ||
Aliases: | Hspe1, Cpn10 | ||
Description: | 10 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P26772] |
Percent Identity: | 82.02 % |
Parental protein coverage: | 85.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VLVERSAAETVTKGGI-MLPEKSQGKVLQATVVAVGSGGKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLD |
VLVERSA.ETV.KGG..MLPE.SQG.VLQATVVA.GSGGKGKGGEIQPVSVKVGD.VLLP...GTKVVLD | |
Retrocopy | VLVERSATETVAKGGV>MLPETSQGEVLQATVVAAGSGGKGKGGEIQPVSVKVGD*VLLP---GTKVVLD |
Parental | DKDYFLFR-DGDILGKYVD |
DK.Y.LFR...DILGKYVD | |
Retrocopy | DKNYVLFR<KTDILGKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .34 RPM |
SRP017611_kidney | 0 .00 RPM | 113 .47 RPM |
SRP017611_liver | 0 .00 RPM | 45 .72 RPM |