RetrogeneDB ID:

retro_ogar_1899

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873572.1:1648313..1648613(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000026694
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000034434
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_1899
GGACAGGCATTTAGAAAGTTTCTTCCACTCTTCCATCGAGTATTGGTGGAAAGGTGTGCAGCCGAAACTGTAACCAAAGG
AGGCATTATGCTTCCAGAAAAATCTCAAGGAAAAGTATTGCAAGCAACAGTAGTGGCTGTTGGGTCAGGCTCTAAAGGAA
AAGGTGGAGAGATTCAACCAGTTAGTGTGAAAGTTGGAGATAAAGTTCTTCTCCCAGAATATGGAGGCACTAAAGTAGTT
CTAGATGACAAGGATTATTTCTTATTTAGAGATGGTGACATTCTTGGAAAGTGTGTAGAC

ORF - retro_ogar_1899 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98. %
Parental protein coverage: 98.04 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGQAFRKFLPLFDRVLVERCAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVL
GQAFRKFLPLF.RVLVERCAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVL
RetrocopyGQAFRKFLPLFHRVLVERCAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVL
ParentalLPEYGGTKVVLDDKDYFLFRDGDILGKYVD
LPEYGGTKVVLDDKDYFLFRDGDILGK.VD
RetrocopyLPEYGGTKVVLDDKDYFLFRDGDILGKCVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_1899 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 175 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001376918 retrocopies
Bos taurus ENSBTAG000000125894 retrocopies
Canis familiaris ENSCAFG000000108904 retrocopies
Choloepus hoffmanni ENSCHOG0000000741717 retrocopies
Cavia porcellus ENSCPOG000000274743 retrocopies
Dasypus novemcinctus ENSDNOG0000001324627 retrocopies
Dipodomys ordii ENSDORG0000001107119 retrocopies
Equus caballus ENSECAG000000268741 retrocopy
Erinaceus europaeus ENSEEUG000000050406 retrocopies
Felis catus ENSFCAG000000144559 retrocopies
Loxodonta africana ENSLAFG000000000571 retrocopy
Microcebus murinus ENSMICG0000000014812 retrocopies
Myotis lucifugus ENSMLUG000000008784 retrocopies
Mus musculus ENSMUSG0000007367611 retrocopies
Oryctolagus cuniculus ENSOCUG000000103601 retrocopy
Otolemur garnettii ENSOGAG00000034434 24 retrocopies
Rattus norvegicus ENSRNOG000000148686 retrocopies
Vicugna pacos ENSVPAG000000058058 retrocopies



Copyright © RetrogeneDB 2014-2017