RetrogeneDB ID: | retro_rnor_1334 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:19687042..19687222(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hspe1 | ||
Ensembl ID: | ENSRNOG00000014868 | ||
Aliases: | Hspe1, Cpn10 | ||
Description: | 10 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P26772] |
Percent Identity: | 88.52 % |
Parental protein coverage: | 59.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LQATVVAVGSGGKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD |
.QATVVAVGS.GKGKGGEIQPVSVKVGDKVL..EYGGTKVVLDDK.YFLFRD.DIL.KYVD | |
Retrocopy | IQATVVAVGSSGKGKGGEIQPVSVKVGDKVL-AEYGGTKVVLDDKHYFLFRDSDILEKYVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 30 .34 RPM |
SRP017611_kidney | 0 .00 RPM | 113 .47 RPM |
SRP017611_liver | 0 .00 RPM | 45 .72 RPM |