RetrogeneDB ID:

retro_mputfur_644

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896930.1:11601596..11602757(+)
Located in intron of:ENSMPUG00000013935
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:IDH3G
Ensembl ID:ENSMPUG00000008781
Aliases:None
Description:isocitrate dehydrogenase 3 (NAD+) gamma [Source:HGNC Symbol;Acc:5386]


Retrocopy-Parental alignment summary:






>retro_mputfur_644
ATCGCATTGAAGATGCTGCCAGCTGCCATTTGCTCTGTGAAGTCCATGTTGCGACCTTCTACTCTCTGCCATTCTCGGGA
GGTTTTATTTGCCCGTGAGATCTCACTGAGGAGCTTCTCTTTCAAACGCAGTATTCTTCCATTGGCCAAGTATGGTGGGC
GACACACTGTGACTCTGATTCCCGGGGATGGCATTGGACCTGAACTTGTGTTGCATGTCAAGACTGTATTCAGACATGCA
CGTGTGCCTGTGGACTTTGAGGAGGTAACGGTTAACTCCACTTCTAGTGAAGAGGACATTCACAATGCCATCATGGCAGT
CAGCCGAAACCGTGTGGCTTTGAAGGGCAACATCGAAACTGACCACAACCTGCCCCCATCTCACAAGTCCCGTAACAACT
TGTTTCGCACCACTCTTGATCTCTATGCCAACGTCATCCATTTTAAAAGTCTGCCAGGCGTGGAGACCCGGCACAAGGAC
ATAGACATCTTAGTTGCTCGGGAAAACACAGAGGGTGAATACAGCAACCTAGAGCATGAGAGTGTGAAGGGAGTGATTGA
GAGCCTCAAGATCATTACCAAGGCCAAGTCTTTGCGCATTGCTGAATATGCCTTCCAGCTGGCCCAAGAAATGGGACGCA
AGAAAGTGACGGCCGTGCACAAGGCCAACATCATGAAACTGGGAGATGGTCTTTTCCTCCAGTGTTGTAAGGAAGTGGCC
TCCTGCTATCCTCAGCTGACCTTCGAGGGCATGATCGTGGATCACACCACCACGCAGCTGGTATCCCGGCCCCAGCAGTT
TGATGTCATGGTGATGCCCAATCTTTATGGCAATGTTGTCAACAATGTCTGCACAGGGTTGGTTGGGGGAGCAGGCCTTG
TGCCTGGTGCGAACTATGGCCATGTGTGCGCAGTGTTTGAAACAGCATCAAGGCAGGTGGGCAGACATTTAGCCAATAAG
AATATTGCCAACCCAACTGCCATGCTGCTCGCAAGCTGTATTATGCTGGATTACCTCAAGCTCCACTCCTATGCCACCTC
CATTCGCACTGCAGTCTTGGCATCCTTGGAGAACAGAAATGTCCACACTCCAGACATTGGAGGCCAGAGTACCACATTGG
ACATTATTCAAGACATAATAAACCACATCAGTACTGTCAGT

ORF - retro_mputfur_644 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.74 %
Parental protein coverage: 98.47 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMALKVAAVVGGAAKAVLRPALLCRPWEVLSAHEAPRRSIS-QQTIPPSAKYGGRHTVTMIPGDGIGPELM
.ALK.........K..LRP..LC...EVL.A.E...RS.S....I.P.AKYGGRHTVT.IPGDGIGPEL.
RetrocopyIALKMLPAAICSVKSMLRPSTLCHSREVLFAREISLRSFSFKRSILPLAKYGGRHTVTLIPGDGIGPELV
ParentalLHVKSVFRHACVPVDFEEVHVSSSADEEDVRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLD
LHVK.VFRHA.VPVDFEEV.V.S...EED..NAIMA..RNRVALKGNIET.HNLPPSHKSRNN..RT.LD
RetrocopyLHVKTVFRHARVPVDFEEVTVNSTSSEEDIHNAIMAVSRNRVALKGNIETDHNLPPSHKSRNNLFRTTLD
ParentalLYANVIHCKSLPGVVTRHRDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQE
LYANVIH.KSLPGV.TRH.DIDIL..RENTEGEYS.LEHESV.GV.ESLKIITKAKSLRIAEYAF.LAQE
RetrocopyLYANVIHFKSLPGVETRHKDIDILVARENTEGEYSNLEHESVKGVIESLKIITKAKSLRIAEYAFQLAQE
ParentalSGRKKVTAVHKANIMKLGDGLFLQCCKEVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIV
.GRKKVTAVHKANIMKLGDGLFLQCCKEVA..YPQ.TFE.MIVD.TT.QLVSRPQQFDVMVMPNLYGN.V
RetrocopyMGRKKVTAVHKANIMKLGDGLFLQCCKEVASCYPQLTFEGMIVDHTTTQLVSRPQQFDVMVMPNLYGNVV
ParentalNNVCAGLVGGPGLVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRK
NNVC.GLVGG.GLV.GANYGHV.AVFETA.R..G...ANKNIANPTA.LLASC.MLD.LKLHSYATSIR.
RetrocopyNNVCTGLVGGAGLVPGANYGHVCAVFETASRQVGRHLANKNIANPTAMLLASCIMLDYLKLHSYATSIRT
ParentalAVLASMDNENMHTPDIGGQGTTSEAIQDIIRHIRIIN
AVLAS..N.N.HTPDIGGQ.TT...IQDII.HI....
RetrocopyAVLASLENRNVHTPDIGGQSTTLDIIQDIINHISTVS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_644 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_644 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 18 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000184661 retrocopy
retro_amel_1892,
Bos taurus ENSBTAG000000010591 retrocopy
retro_btau_1194,
Canis familiaris ENSCAFG000000192861 retrocopy
retro_cfam_1023,
Callithrix jacchus ENSCJAG000000111851 retrocopy
retro_cjac_1597,
Equus caballus ENSECAG000000185091 retrocopy
retro_ecab_941,
Homo sapiens ENSG000000678291 retrocopy
retro_hsap_759,
Latimeria chalumnae ENSLACG000000073651 retrocopy
retro_lcha_17,
Loxodonta africana ENSLAFG000000069041 retrocopy
retro_lafr_560,
Macropus eugenii ENSMEUG000000139341 retrocopy
retro_meug_203,
Myotis lucifugus ENSMLUG000000044571 retrocopy
retro_mluc_396,
Mustela putorius furoENSMPUG00000008781 1 retrocopy
retro_mputfur_644 ,
Mus musculus ENSMUSG000000020101 retrocopy
retro_mmus_134,
Nomascus leucogenys ENSNLEG000000135401 retrocopy
retro_nleu_394,
Otolemur garnettii ENSOGAG000000067351 retrocopy
retro_ogar_25,
Pteropus vampyrus ENSPVAG000000131631 retrocopy
retro_pvam_373,
Rattus norvegicus ENSRNOG000000372841 retrocopy
retro_rnor_209,
Sus scrofa ENSSSCG000000127831 retrocopy
retro_sscr_662,
Tursiops truncatus ENSTTRG000000117281 retrocopy
retro_ttru_848,


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