RetrogeneDB ID:

retro_ogar_25

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873529.1:17423202..17424339(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000034533
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:IDH3G
Ensembl ID:ENSOGAG00000006735
Aliases:None
Description:isocitrate dehydrogenase 3 (NAD+) gamma [Source:HGNC Symbol;Acc:5386]


Retrocopy-Parental alignment summary:






>retro_ogar_25
ATGGCACTGAAGGTGGTGCTCAGGTCGGCCCTTCTCTGTCGTCCTTGGGAGGCTCTAGGTGCCCTTGAGGCCCCCCGGAG
GAGTATGGTTTCACCTCCGTCCGCTAAGTATGGTGGGCGGCACACAGTGACTATGATCCCCGGGGACGGGACTGGACCAG
AGCTCATGTTTCACGTCAAGACCGTGTTCAGGCACGCCTGTGTGCCTGTGGACTTTGAGGAGGTGCCAGTGAATTCCAGC
ACTGACGAAGAGGATATCCACAATGCCATTATGTCCATCCGTCGGAATGGCGTGGCTCTGAAGGGCAACATTGACACAAA
CCATAATCTGCCACCATCCCACAAATCGCGAAACAACATCCTTCGCACCAGCCTGGACCTCTATGCGAATGTCATCCACT
GTAAGAGCCTGCCGGGAGTGGTGACCCGGCACAAGGACATAGACATCATCGTAGTACGGGAAAACACAGAGGGTGAGTAC
AGCAGCCTGGAGCATGAGAGCGTGGCAGGGGTGGTGGAGAGCCTGAAGATCGTCACCAAGGCCAAATCCCTGCGCGTTGC
CGAATACGCCTTCCAGCTGGCCCAGGAGAGTGGGCGCAAGAAAGTGACAGCCGTGCACAAGGCCAACATCATGAAATTGG
GTGACGGGCTCTTCCTCCAGTGCTGCAGGGAGGTGGCAGCTCGCTACCCCCAGATCACCTTCGAGAGCATGATCGTGGAC
AACACTACCATGCAGCTTGTGTACCAGCCCCAGCAGTTTGATGTCATGGTGATGCCCAATCTCTATGGCAACATTGTCAA
CAACGTCTGCGCAGGGCTGGTTGGGGGCCCAGGTCTAGTGGCTGGGGCCAACTACGGCCATGTGCACGCAGTTTTTGAGA
CCGGTACAAGGCACACAGGCAAGAGCATCGCCAATAAGAACATGGCCAACCCCACAGCAATTCTGCTGGCGAGTTGCTTG
ATGCTAGACCACCTCAAGCTCCACTCCTACGCCTCCTCTATCCGCAAGGCCGTCTTGGCGTCCATGGTCAATAAAAACAT
GCACACCCCAGACATTGGGGGCCAGAGCACCACGTCTGAAACCATCCAGGACATCATCTGCCGCATCCGCGTCAATAGCA
GGGTCATGGAGACCTAG

ORF - retro_ogar_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.02 %
Parental protein coverage: 96.44 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalQAVLRPALLCSPREVPGAHKAPWRSISSQQTIPPSAKYGGRHTVTMIPGDGIGPELMLHVKSVFRHACVP
..VLR.ALLC.P.E..GA..AP.RS..S....PPSAKYGGRHTVTMIPGDG.GPELM.HVK.VFRHACVP
RetrocopyKVVLRSALLCRPWEALGALEAPRRSMVS----PPSAKYGGRHTVTMIPGDGTGPELMFHVKTVFRHACVP
ParentalVDFEEVHVSSNADEEDIRNAIMAIRRNRVALKGNIETNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPG
VDFEEV.V.S..DEEDI.NAIM.IRRN.VALKGNI.TNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPG
RetrocopyVDFEEVPVNSSTDEEDIHNAIMSIRRNGVALKGNIDTNHNLPPSHKSRNNILRTSLDLYANVIHCKSLPG
ParentalVVTRHKDIDILIVRENTEGEYSSLEHESVAGVVESLKIITKAKSLRIAEYAFKLAQESGRKKVTAVHKAN
VVTRHKDIDI..VRENTEGEYSSLEHESVAGVVESLKI.TKAKSLR.AEYAF.LAQESGRKKVTAVHKAN
RetrocopyVVTRHKDIDIIVVRENTEGEYSSLEHESVAGVVESLKIVTKAKSLRVAEYAFQLAQESGRKKVTAVHKAN
ParentalIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGL
IMKLGDGLFLQCCREVAARYPQITFE.MIVDNTTMQLV..PQQFDVMVMPNLYGNIVNNVCAGLVGGPGL
RetrocopyIMKLGDGLFLQCCREVAARYPQITFESMIVDNTTMQLVYQPQQFDVMVMPNLYGNIVNNVCAGLVGGPGL
ParentalVAGANYGHVYAVFETATRNTGKSIANKNIANPTATLLASCMMLDHLKLHSYATSIRKAVLASMDNENMHT
VAGANYGHV.AVFET.TR.TGKSIANKN.ANPTA.LLASC.MLDHLKLHSYA.SIRKAVLASM.N.NMHT
RetrocopyVAGANYGHVHAVFETGTRHTGKSIANKNMANPTAILLASCLMLDHLKLHSYASSIRKAVLASMVNKNMHT
ParentalPDIGGQGTTSEAIQDIIRHIRIINGRAVE
PDIGGQ.TTSE.IQDII..IR..N.R..E
RetrocopyPDIGGQSTTSETIQDIICRIR-VNSRVME

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Otolemur garnettii was not studied using ChIP-Seq data.

EST - click to see more details

Otolemur garnettii was not studied using EST data.

TSS - click to see more details

Otolemur garnettii was not studied using FANTOM5 data.

Lab - click to see more details

retro_ogar_25 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 19 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000184661 retrocopy
retro_amel_1892,
Bos taurus ENSBTAG000000010591 retrocopy
retro_btau_1194,
Canis familiaris ENSCAFG000000192861 retrocopy
retro_cfam_1023,
Callithrix jacchus ENSCJAG000000111851 retrocopy
retro_cjac_1597,
Equus caballus ENSECAG000000185091 retrocopy
retro_ecab_941,
Homo sapiens ENSG000000678291 retrocopy
retro_hsap_759,
Latimeria chalumnae ENSLACG000000073651 retrocopy
retro_lcha_17,
Loxodonta africana ENSLAFG000000069041 retrocopy
retro_lafr_560,
Macropus eugenii ENSMEUG000000139341 retrocopy
retro_meug_203,
Myotis lucifugus ENSMLUG000000044571 retrocopy
retro_mluc_396,
Mustela putorius furoENSMPUG000000087811 retrocopy
retro_mputfur_644,
Mus musculus ENSMUSG000000020101 retrocopy
retro_mmus_134,
Nomascus leucogenys ENSNLEG000000135401 retrocopy
retro_nleu_394,
Otolemur garnettii ENSOGAG000000046841 retrocopy
retro_ogar_2890,
Otolemur garnettii ENSOGAG00000006735 1 retrocopy
retro_ogar_25 ,
Pteropus vampyrus ENSPVAG000000131631 retrocopy
retro_pvam_373,
Rattus norvegicus ENSRNOG000000372841 retrocopy
retro_rnor_209,
Sus scrofa ENSSSCG000000127831 retrocopy
retro_sscr_662,
Tursiops truncatus ENSTTRG000000117281 retrocopy
retro_ttru_848,


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