RetrogeneDB ID: | retro_nleu_1342 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397289.1:21366736..21367638(-) | ||
Located in intron of: | ENSNLEG00000005301 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSNLEG00000011207 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.65 % |
Parental protein coverage: | 92.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | FNKGPSYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKV |
FNKGPSY.LSAEVKN.I.SKYD.Q.E..L..WIE..T..SIG..FQ.GLKD.IIL..L.N.L.PGSV.K. | |
Retrocopy | FNKGPSYWLSAEVKNQILSKYDPQKEAELHSWIEGLTSLSIGPDFQKGLKDRIILHTLMNELHPGSVPKI |
Parental | NESSL-NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIGV |
N.S...NW.QLEN..NFIKAI..YGM.P.D.F.AN.LFE.GNMTQVQ..L.ALAG.AKTKG.....DIG. | |
Retrocopy | NHSMQ>NWHQLENLSNFIKAIVSYGMNPMDLFDANNLFESGNMTQVQVSLLALAGKAKTKGLQSGVDIGI |
Parental | KYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRR-HLYDPKMQTDKPF-DQTTISLQMGT |
.Y..KQ.R.FD....KAGQ.VIGLQMGTNKCASQ.G...YGTRR.HLY.PK.....P..D..TISLQMGT | |
Retrocopy | RYSKKQERNFDYNTTKAGQCVIGLQMGTNKCASQSGIIMYGTRR<HLYSPKNHILPPW<DHSTISLQMGT |
Parental | NKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPV |
NK.AS..GM.AP.T.R.IYD.KL.....DNS..SLQMG....A.Q....V..LGRQ.Y..KYC..P..P. | |
Retrocopy | NKCASHVGMTAPWTQRHIYDTKLGTNKCDNSSMSLQMGYMQGANQSS-QVFSLGRQIYNSKYC--PQGPA |
Parental | IHNGSQGTGTNGSEISDSDYQAEYPDE |
......GT...........Y...Y..E | |
Retrocopy | ANRAPSGTNDCPGPGKAPEYPPYYQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001161 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013350 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |