RetrogeneDB ID: | retro_nleu_668 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397269.1:19529501..19530388(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSNLEG00000011207 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.97 % |
Parental protein coverage: | 90.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SYGLSAEVKNKIASKYDHQAEEDLRNWIEEVTGMSIGTNFQLGLKDGIILCELINKLQPGSVKKVNESSL |
SYGL.AEVKN...SKYD.Q.E..L....E...G.SIG.NFQ.GLKDGI.LC.L.NKLQPGSV.K.N.S.. | |
Retrocopy | SYGLAAEVKNWLLSKYDPQKEAELHS*MEGLIGLSIGPNFQKGLKDGIMLCTLMNKLQPGSVPKINCSMR |
Parental | -NWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDIGVKYAEK |
.NW.QLEN..NFIKA...YGM.P.D.FEAN.LFE.GNM.QVQ..L..LAG.AKTKG.....DIG.KY.EK | |
Retrocopy | <NWHQLENLSNFIKAMVSYGMNPMDLFEANNLFESGNMMQVQVSLLTLAGKAKTKGLQNGVDIGIKYWEK |
Parental | QTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTA-YGTRRHLYDPKMQ-TDKPFDQTTISLQMGTNKGAS |
Q...FD....KAGQ.VIGLQ.G.NKCA.Q.GMT....TRRHLYDPK......P.D..TISLQM.T.K.AS | |
Retrocopy | QEQNFDDATMKAGQCVIGLQKGANKCANQSGMTV<VHTRRHLYDPKNH>SCPPRDHSTISLQMVTKKCAS |
Parental | QAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPVIHNGS |
Q.GM.APGT...IYD.KL.....DNS..SLQ.G....A......V.GLGRQ..D...C...T..V..... | |
Retrocopy | QVGMTAPGTQWHIYDTKLGTNKCDNSSMSLQTGYPQDAHHSS-QVFGLGRQIHDSMHCLQDT--VADRAP |
Parental | QGTGTNGSEISDSDYQAEYPDE |
.GTG..............Y..E | |
Retrocopy | SGTGDCPGSGKTPEHPPYYQEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001161 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013350 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |