RetrogeneDB ID: | retro_ocun_225 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:130235323..130235845(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027723 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSOCUG00000006311 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 90.75 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPF |
MA.MNRPAPVEVTY.NMRFLITHNPT.ATLN.FIEELKK.GVTTIVRVCEATYDT.L.EKEGI.VLDWPF | |
Retrocopy | MAPMNRPAPVEVTYRNMRFLITHNPTTATLNRFIEELKKFGVTTIVRVCEATYDTALMEKEGIQVLDWPF |
Parental | DDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
DDG..PSNQIVDDWLSLV.IKFREEPGCCIAVHCVAGLGR.PVLVALALIE.GMK.EDAVQFIRQKRRGA | |
Retrocopy | DDGSSPSNQIVDDWLSLVNIKFREEPGCCIAVHCVAGLGRTPVLVALALIESGMKNEDAVQFIRQKRRGA |
Parental | FNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ |
FNSKQLLYLEKYR.KMRLRFKDS.GHRNNCCIQ | |
Retrocopy | FNSKQLLYLEKYRSKMRLRFKDSSGHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 7 .12 RPM |
SRP017611_kidney | 0 .10 RPM | 8 .62 RPM |
SRP017611_liver | 0 .00 RPM | 6 .63 RPM |