RetrogeneDB ID:

retro_ogar_671

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873525.1:45988073..45988485(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BLOC1S2
Ensembl ID:ENSOGAG00000001395
Aliases:None
Description:biogenesis of lysosomal organelles complex-1, subunit 2 [Source:HGNC Symbol;Acc:20984]


Retrocopy-Parental alignment summary:






>retro_ogar_671
TCAGCTGTGGTGGAGGGTGTCCCGGCGACCCAGCATGAGGTGCCCACTGGAGATGACGTGGTGCTGGAGACAGCCAGGGA
AGCCAAGGCTCCTGCAGAAGAAGACACCACTGAGCTCGGCCGGGACGTGCTTTCCCAAATGGCCATGTACCTGACAGGGG
AACTGATGGCCACCAGTGAAGACGATAAGGTGCTTGAAAATATGAATAAGCTCACCAGCTCGAAGTATCCTGAAATGAAT
GACATTGCTGTAATAGCAGAAACTTGAAGGACTTTAAAGCAGAAACATGGCCGATCGCAGCCTTATCAGGGTCAGATCAA
GGTCACAGAGGTGGTGGCAGCTCCTGAGCAGGCAGCTTGTAAGTTGAATGCACATTTAAAAAAGGCTGGAAGCCAAGTAC
AAGAAGCTGGAG

ORF - retro_ogar_671 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.14 %
Parental protein coverage: 97.89 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAAAAEGVPAPRREEPARDDAAVETAEEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENMNK
.A..EGVPA...E.P..DD...ETA.EAK.PAE.D..EL.RD..S.MA.YLTGEL.ATSED.K.LENMNK
RetrocopySAVVEGVPATQHEVPTGDDVVLETAREAKAPAEEDTTELGRDVLSQMAMYLTGELMATSEDDKVLENMNK
ParentalLTSLKYLEMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKK-LEAKYKKLE
LTS.KY.EM.DIA..I......L.QK....QPY..QI.V..E.VAA.EQAA.KL.A..KK.LEAKYKKLE
RetrocopyLTSSKYPEMNDIAV-IAET*RTLKQKHGRSQPYQGQIKV-TEVVAAPEQAACKLNAHLKK>LEAKYKKLE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_671 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 65 retrocopies.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG000000072991 retrocopy
Macropus eugenii ENSMEUG0000000363057 retrocopies
Mus musculus ENSMUSG000000575062 retrocopies
Otolemur garnettii ENSOGAG00000001395 4 retrocopies
Tupaia belangeri ENSTBEG000000168891 retrocopy



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