RetrogeneDB ID: | retro_vpac_584 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_58366:3064..3458(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSVPAG00000008894 | ||
Aliases: | None | ||
Description: | ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370] |
Percent Identity: | 71.97 % |
Parental protein coverage: | 53.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FSGVFVKVTPQTIK-TLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIVPLTDNTVIEEHLGKFGVIC |
...VF.KVT.QTIK.TL..VE..VTW.FPNLKSV.E.ILK.GQ.KVKNKI.PLT.NTVIE.H.GKFGVIC | |
Retrocopy | WNSVFAKVTLQTIK>TLPTVETSVTWEFPNLKSVGEVILKHGQPKVKNKIIPLTGNTVIEQHPGKFGVIC |
Parental | LEDLIHEIAFPGKNFQEISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN |
LED.IHEI.FP.KNFQ.ISGFL.PFQ.SVA.H...NRVGFL.EV.S.GY.GER..QL..QLN | |
Retrocopy | LEDHIHEISFPAKNFQVISGFLCPFQHSVACHTVNNRVGFLGEVASSGYQGERVTQLTQQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |