RetrogeneDB ID:

retro_ggor_2524

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:72980972..72981372(+)
Located in intron of:ENSGGOG00000005876
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL7L1
Ensembl ID:ENSGGOG00000009958
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2524
ATGGCAAAGCAGGAGCAAAGAAAAATCCCTTTGGCTCCAGAAAATCTCCTGAAAGCAGAAGGCTTATCAAGGCCTCAAAG
CCATCCAGTCAAAGTAGGCACTTTTGGCAAAGGAGGAGCAGAGGAAAGGAAAAGGGCTCAGGTTTAAACGACTGGAATCA
TTCCTACATGATTCCTGGTGGCAGAAACATGACAAGGTGCGTCTCAGACGACTAGAAGTAAAACCTCACGCCTTGGAATC
GCCAGATAAACATTCCTTGGCCTTTGTTGTATGCATCGAAAGGATTGATGGTGTGAGTTTACTGGTGCAGAGAACCATTG
CAAGACTTTGCCTAAAGAAAATTTTTCGTGGTGTCTTTGTAAAAGTCACCCCCCAGAACCTAAAAATGCAGCGTATAGTA

ORF - retro_ggor_2524 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.56 %
Parental protein coverage: 54.47 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAEQEQRKIPLVPENLLK-KRKAYQA-LKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWRQKRDKVR
MA.QEQRKIPL.PENLLK..R....A.LKA.Q.K.ALLAK.EQ.KGKGLRFKRLESFLHDSW.QK.DKVR
RetrocopyMAKQEQRKIPLAPENLLK<SRRLIKA<LKAIQSK*ALLAKEEQRKGKGLRFKRLESFLHDSWWQKHDKVR
ParentalLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIV
LRRLEVKPHALE.PDKHSLAFVV.IERIDGVSLLVQRTIARL.LKKIF.GVFVKVTPQNLKM.RIV
RetrocopyLRRLEVKPHALESPDKHSLAFVVCIERIDGVSLLVQRTIARLCLKKIFRGVFVKVTPQNLKMQRIV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 37 .69 RPM
SRP007412_cerebellum 0 .04 RPM 31 .64 RPM
SRP007412_heart 0 .03 RPM 9 .07 RPM
SRP007412_kidney 0 .08 RPM 48 .41 RPM
SRP007412_liver 0 .24 RPM 36 .48 RPM
SRP007412_testis 0 .00 RPM 33 .77 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2524 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2524 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 27 parental genes, and 109 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000127912 retrocopies
Bos taurus ENSBTAG000000184782 retrocopies
Canis familiaris ENSCAFG000000017284 retrocopies
Choloepus hoffmanni ENSCHOG000000003064 retrocopies
Cavia porcellus ENSCPOG000000211892 retrocopies
Dasypus novemcinctus ENSDNOG000000134851 retrocopy
Equus caballus ENSECAG000000031131 retrocopy
Erinaceus europaeus ENSEEUG000000104311 retrocopy
Echinops telfairi ENSETEG000000024193 retrocopies
Felis catus ENSFCAG000000097071 retrocopy
Gorilla gorilla ENSGGOG00000009958 15 retrocopies
Macaca mulatta ENSMMUG000000213131 retrocopy
Monodelphis domestica ENSMODG000000190281 retrocopy
Mustela putorius furoENSMPUG000000132961 retrocopy
Mus musculus ENSMUSG000000638884 retrocopies
Oryctolagus cuniculus ENSOCUG000000038446 retrocopies
Otolemur garnettii ENSOGAG000000126713 retrocopies
Pongo abelii ENSPPYG0000001661921 retrocopies
Pteropus vampyrus ENSPVAG000000086963 retrocopies
Rattus norvegicus ENSRNOG000000162691 retrocopy
Sorex araneus ENSSARG000000052862 retrocopies
Sarcophilus harrisii ENSSHAG000000112191 retrocopy
Sus scrofa ENSSSCG000000264723 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000098412 retrocopies
Tarsius syrichta ENSTSYG0000000484816 retrocopies
Tursiops truncatus ENSTTRG000000069716 retrocopies
Vicugna pacos ENSVPAG000000088942 retrocopies



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