RetrogeneDB ID: | retro_ggor_2524 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:72980972..72981372(+) | ||
Located in intron of: | ENSGGOG00000005876 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSGGOG00000009958 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.56 % |
Parental protein coverage: | 54.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAEQEQRKIPLVPENLLK-KRKAYQA-LKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWRQKRDKVR |
MA.QEQRKIPL.PENLLK..R....A.LKA.Q.K.ALLAK.EQ.KGKGLRFKRLESFLHDSW.QK.DKVR | |
Retrocopy | MAKQEQRKIPLAPENLLK<SRRLIKA<LKAIQSK*ALLAKEEQRKGKGLRFKRLESFLHDSWWQKHDKVR |
Parental | LRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIV |
LRRLEVKPHALE.PDKHSLAFVV.IERIDGVSLLVQRTIARL.LKKIF.GVFVKVTPQNLKM.RIV | |
Retrocopy | LRRLEVKPHALESPDKHSLAFVVCIERIDGVSLLVQRTIARLCLKKIFRGVFVKVTPQNLKMQRIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 37 .69 RPM |
SRP007412_cerebellum | 0 .04 RPM | 31 .64 RPM |
SRP007412_heart | 0 .03 RPM | 9 .07 RPM |
SRP007412_kidney | 0 .08 RPM | 48 .41 RPM |
SRP007412_liver | 0 .24 RPM | 36 .48 RPM |
SRP007412_testis | 0 .00 RPM | 33 .77 RPM |