Parental gene:

RPL7L1, ENSSSCG00000026472

Aliases:None
Description:Sus scrofa ribosomal protein L7-like 1 (RPL7L1), mRNA. [Source:RefSeq mRNA;Acc:NM_001123192]
Organism:Pig (Sus scrofa)
Coordinates:7:43388883..43399417(+)


>ENSSSCG00000026472
ATGGCGGAGGAGGAGCAAAGAAAAAAGATCCCTTTGGTTCCAGAAAATCTCTTGAAAAAGAGGAAGGCATATCAGGCCCT
CAAAGCCACACAGGCGAAGCAAGCGCTTTTGCAAAAGAAAGAGCAGAGGAAAGGAAAGGAACTCAAGTTTAAACGACTGG
AATGGTTCCTACATGATTCCTGGCGGCAACTACGTGACAGAGTGCGCCTCAGACGACTGGAAGTGAAGCCTCATGGCTTG
GAAGTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGCATCGAAAGGATCAGTGGGGTGAGTTCAGTGGTGCAGAGGAC
CATTGCAAGACTTCGCCTGAAGAAGATTTTCAGCGGTGTCTTTATGCAGGTCACCCCTCAAACCATAAAAACGCTTCGTA
TAGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTTCGGGAACTCATCTTAAAACGGGGACAAGCCAAG
GTCAAGAACAAAATCATTCCCCTGACAGACAACACAGTGATTGAGGAGCATCTGGGGAAGTTTGGTGTCATTTGCTTGGA
AGACCTCATTCATGAAATTGCCTTCCCTGGGAAGAATTTTCAGGCGATCTCAGGGTTCTTGCGCCCTTTTCAACTCTCAG
TGGCCCGTCATGCTACCAAGAATAGAGTGGGCTTCCTCAAGGAAGTGGGCTCTCCTGGCTACCGTGGTGAACGCATCAAT
CAGCTCATCCGGCAATTGAACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 32 .92 RPM
SRP014902_testis 33 .52 RPM
SRP018856_adipose 56 .16 RPM
SRP018288_kidney 54 .18 RPM
SRP018288_lung 38 .39 RPM
SRP018288_liver 55 .33 RPM
SRP018288_heart 38 .22 RPM
SRP035408_liver 95 .35 RPM
SRP035408_brain 91 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2one 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2one 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_one2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2one 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 ortholog_one2many 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2one 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2one 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2one 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2one 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2one 1 retrogene
retro_fcat_143,
Homo sapiens ENSG00000146223 ortholog_one2one 22 retrogenes
retro_hsap_1285, retro_hsap_1291, retro_hsap_1602, retro_hsap_1623, retro_hsap_1661, retro_hsap_1836, retro_hsap_2201, retro_hsap_2389, retro_hsap_2735, retro_hsap_2845, retro_hsap_3053, retro_hsap_3068, retro_hsap_3077, retro_hsap_3187, retro_hsap_3250, retro_hsap_3373, retro_hsap_3556, retro_hsap_3641, retro_hsap_3846, retro_hsap_3957, retro_hsap_4770, retro_hsap_4827,
Gorilla gorilla ENSGGOG00000009958 ortholog_one2many 15 retrogenes
retro_ggor_1009, retro_ggor_1013, retro_ggor_1253, retro_ggor_1261, retro_ggor_1904, retro_ggor_2099, retro_ggor_2108, retro_ggor_2113, retro_ggor_2162, retro_ggor_2282, retro_ggor_2457, retro_ggor_2524, retro_ggor_2591, retro_ggor_2659, retro_ggor_2973,
Macaca mulatta ENSMMUG00000021313 ortholog_one2many 1 retrogene
retro_mmul_11,
Monodelphis domestica ENSMODG00000019028 ortholog_one2one 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2one 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 ortholog_one2many 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Nomascus leucogenys ENSNLEG00000004649 ortholog_one2one 21 retrogenes
retro_nleu_1375, retro_nleu_1597, retro_nleu_1646, retro_nleu_1661, retro_nleu_2007, retro_nleu_2011, retro_nleu_2017, retro_nleu_2138, retro_nleu_2201, retro_nleu_2282, retro_nleu_2562, retro_nleu_2599, retro_nleu_2694, retro_nleu_2863, retro_nleu_2938, retro_nleu_332, retro_nleu_502, retro_nleu_536, retro_nleu_597, retro_nleu_711, retro_nleu_727,
Oryctolagus cuniculus ENSOCUG00000003844 ortholog_one2one 6 retrogenes
retro_ocun_1393, retro_ocun_1604, retro_ocun_1818, retro_ocun_278, retro_ocun_509, retro_ocun_598,
Otolemur garnettii ENSOGAG00000012671 ortholog_one2many 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pongo abelii ENSPPYG00000016619 ortholog_one2one 21 retrogenes
retro_pabe_1064, retro_pabe_1069, retro_pabe_1315, retro_pabe_1341, retro_pabe_1370, retro_pabe_1379, retro_pabe_1457, retro_pabe_2078, retro_pabe_2154, retro_pabe_2354, retro_pabe_2527, retro_pabe_2543, retro_pabe_2598, retro_pabe_2609, retro_pabe_2644, retro_pabe_2988, retro_pabe_3053, retro_pabe_3259, retro_pabe_3410, retro_pabe_3714, retro_pabe_3753,
Pan troglodytes ENSPTRG00000018175 ortholog_one2one 23 retrogenes
retro_ptro_1074, retro_ptro_1088, retro_ptro_1127, retro_ptro_1162, retro_ptro_1671, retro_ptro_1849, retro_ptro_1927, retro_ptro_1987, retro_ptro_2069, retro_ptro_2076, retro_ptro_2198, retro_ptro_2257, retro_ptro_2293, retro_ptro_2416, retro_ptro_2466, retro_ptro_2622, retro_ptro_2686, retro_ptro_2916, retro_ptro_2933, retro_ptro_3212, retro_ptro_355, retro_ptro_878, retro_ptro_882,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2one 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 ortholog_one2many 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2one 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2one 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000006182 within_species_paralog 3 retrogenes
retro_sscr_1138, retro_sscr_209, retro_sscr_796,
Ictidomys tridecemlineatus ENSSTOG00000009841 ortholog_one2many 2 retrogenes
retro_itri_1233, retro_itri_417,
Tarsius syrichta ENSTSYG00000004848 ortholog_one2one 16 retrogenes
retro_tsyr_1312, retro_tsyr_1340, retro_tsyr_1380, retro_tsyr_1399, retro_tsyr_1729, retro_tsyr_1914, retro_tsyr_1933, retro_tsyr_2161, retro_tsyr_357, retro_tsyr_455, retro_tsyr_469, retro_tsyr_581, retro_tsyr_606, retro_tsyr_642, retro_tsyr_703, retro_tsyr_856,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2one 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2one 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_198 76.30 53.85
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2. retro_sscr_756 65.00 55.47
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3. retro_sscr_807 64.05 61.13
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Download FASTA sequences of all ENSSSCG00000026472 retrocopies