RetrogeneDB ID: | retro_tbel_2145 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_102288:12509..12951(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSTBEG00000013380 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 77.48 % |
Parental protein coverage: | 80.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | IEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK- |
.EDSYRKQ.EVDAQ.CMLEIL.TAGT............NGQ.FALV.SITAQ.TFNDLQDL.EQIL.VK. | |
Retrocopy | MEDSYRKQAEVDAQRCMLEILATAGTTVYSS-EGFVRGNGQRFALVRSITAQPTFNDLQDLGEQILPVK< |
Parental | DTDDVPMILVGNKCDLEDERVVGKEQGQ-NLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRKTPVPG |
DTDDVPMI.VGNKCDLE.ERVVGKEQGQ.N.AR.WNNCA..ESSA.SKINVNEIFYDL.RQINRK.PVPG | |
Retrocopy | DTDDVPMIPVGNKCDLEEERVVGKEQGQ<NPARPWNNCAL*ESSARSKINVNEIFYDLLRQINRKIPVPG |
Parental | KARKKSSCQLL |
KA.KKSS.QLL | |
Retrocopy | KACKKSSRQLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007261 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000025649 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052681 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003573 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011497 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003830 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013380 | 4 retrocopies |