Parental gene:

RAP1B, ENSCJAG00000007261

Aliases:None
Description:RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:57923511..57966744(+)


>ENSCJAG00000007261
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGTGTTGGAAAGTCTGCTTTGACTGTACAATTTGTTCAAGGAAT
TTTTGTTGAAAAATACGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCACAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAACAATTTACAGCAATGAGGGATTTGTACATGAAAAATGGGCAAGGCTTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAACGATTTACAAGACCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATTCTTGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAGGAACAAGGTCAAAACC
TAGCAAGACAGTGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCTCGCAAAAAGTCGTCATGTCAGCTGCTTTAA

Library Parental gene expression (RPM)
SRP051959_colon 81 .38 RPM
SRP051959_heart 39 .41 RPM
SRP051959_kidney 59 .21 RPM
SRP051959_liver 48 .00 RPM
SRP051959_lung 114 .80 RPM
SRP051959_lymph_node 109 .97 RPM
SRP051959_skeletal_muscle 25 .48 RPM
SRP051959_spleen 116 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 possible_ortholog 1 retrogene
retro_amel_103,
Callithrix jacchus ENSCJAG00000007630 other_paralog 1 retrogene
retro_cjac_3313,
Callithrix jacchus ENSCJAG00000013392 within_species_paralog 7 retrogenes
retro_cjac_1671, retro_cjac_2218, retro_cjac_3376, retro_cjac_3707, retro_cjac_3843, retro_cjac_3844, retro_cjac_728,
Callithrix jacchus ENSCJAG00000036517 other_paralog 1 retrogene
retro_cjac_2400,
Cavia porcellus ENSCPOG00000008272 possible_ortholog 4 retrogenes
retro_cpor_1194, retro_cpor_632, retro_cpor_739, retro_cpor_85,
Gorilla gorilla ENSGGOG00000025649 ortholog_one2one 1 retrogene
retro_ggor_2836,
Loxodonta africana ENSLAFG00000016460 possible_ortholog 1 retrogene
retro_lafr_482,
Mus musculus ENSMUSG00000052681 ortholog_one2one 1 retrogene
retro_mmus_1370,
Nomascus leucogenys ENSNLEG00000003573 ortholog_one2one 2 retrogenes
retro_nleu_1034, retro_nleu_481,
Otolemur garnettii ENSOGAG00000005746 ortholog_one2one 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Sarcophilus harrisii ENSSHAG00000011497 ortholog_one2one 1 retrogene
retro_shar_425,
Sus scrofa ENSSSCG00000030014 possible_ortholog 2 retrogenes
retro_sscr_435, retro_sscr_909,
Tupaia belangeri ENSTBEG00000013380 ortholog_one2one 4 retrogenes
retro_tbel_2145, retro_tbel_4650, retro_tbel_4658, retro_tbel_613,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_607 88.15 73.37
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2. retro_cjac_1435 72.48 76.76
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3. retro_cjac_2371 74.80 66.85
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Download FASTA sequences of all ENSCJAG00000007261 retrocopies