Parental gene:

RAP1B, ENSGGOG00000025649

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:12:67016267..67064014(+)


>ENSGGOG00000025649
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTGCTTTGACTGTACAATTTGTTCAAGGAAT
TTTTGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGATGCACAACAGTGTATGCTTG
AAATCTTGGATACTGCAGGAACGGAGCAATTTACAGCAATGAGGGATTTATACATGAAAAATGGACAGGGATTTGCATTA
GTTTATTCCATCACAGCACAGTCCACATTTAACGATTTACAAGACCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGA
TGATGTTCCAATGATTCTTGTTGGTAATAAGTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAGGAACAAGGTCAAAATC
TAGCAAGACAATGGAACAACTGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGAC
CTAGTGCGGCAAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCTCGCAAAAAGTCATCATGTCAGCTGCTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 16 .26 RPM
SRP007412_cerebellum 19 .42 RPM
SRP007412_heart 7 .97 RPM
SRP007412_kidney 77 .85 RPM
SRP007412_liver 55 .50 RPM
SRP007412_testis 78 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008637 possible_ortholog 1 retrogene
retro_amel_103,
Callithrix jacchus ENSCJAG00000007261 ortholog_one2one 3 retrogenes
retro_cjac_1435, retro_cjac_2371, retro_cjac_607,
Cavia porcellus ENSCPOG00000008272 possible_ortholog 4 retrogenes
retro_cpor_1194, retro_cpor_632, retro_cpor_739, retro_cpor_85,
Dasypus novemcinctus ENSDNOG00000019724 possible_ortholog 18 retrogenes
retro_dnov_1243, retro_dnov_1249, retro_dnov_1323, retro_dnov_1395, retro_dnov_1574, retro_dnov_1710, retro_dnov_1763, retro_dnov_1841, retro_dnov_186, retro_dnov_1976, retro_dnov_2033, retro_dnov_217, retro_dnov_2679, retro_dnov_298, retro_dnov_318, retro_dnov_719, retro_dnov_761, retro_dnov_84,
Erinaceus europaeus ENSEEUG00000010052 possible_ortholog 1 retrogene
retro_eeur_327,
Gorilla gorilla ENSGGOG00000001648 other_paralog 1 retrogene
retro_ggor_79,
Loxodonta africana ENSLAFG00000016460 possible_ortholog 1 retrogene
retro_lafr_482,
Microcebus murinus ENSMICG00000013148 possible_ortholog 1 retrogene
retro_mmur_116,
Macaca mulatta ENSMMUG00000011442 possible_ortholog 2 retrogenes
retro_mmul_1151, retro_mmul_1863,
Mus musculus ENSMUSG00000052681 ortholog_one2one 1 retrogene
retro_mmus_1370,
Nomascus leucogenys ENSNLEG00000003573 ortholog_one2one 2 retrogenes
retro_nleu_1034, retro_nleu_481,
Oryctolagus cuniculus ENSOCUG00000029552 possible_ortholog 5 retrogenes
retro_ocun_1132, retro_ocun_1200, retro_ocun_597, retro_ocun_636, retro_ocun_796,
Otolemur garnettii ENSOGAG00000005746 ortholog_one2one 2 retrogenes
retro_ogar_2260, retro_ogar_272,
Pan troglodytes ENSPTRG00000005197 possible_ortholog 3 retrogenes
retro_ptro_1812, retro_ptro_2383, retro_ptro_2877,
Rattus norvegicus ENSRNOG00000007048 possible_ortholog 4 retrogenes
retro_rnor_2479, retro_rnor_870, retro_rnor_871, retro_rnor_872,
Sarcophilus harrisii ENSSHAG00000011497 ortholog_one2one 1 retrogene
retro_shar_425,
Sus scrofa ENSSSCG00000030014 possible_ortholog 2 retrogenes
retro_sscr_435, retro_sscr_909,
Tupaia belangeri ENSTBEG00000013380 ortholog_one2one 4 retrogenes
retro_tbel_2145, retro_tbel_4650, retro_tbel_4658, retro_tbel_613,
Tarsius syrichta ENSTSYG00000000192 possible_ortholog 1 retrogene
retro_tsyr_910,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_2836 87.10 100.00
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Download FASTA sequences of all ENSGGOG00000025649 retrocopies