RetrogeneDB ID: | retro_tbel_4650 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_96366:3925..4332(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000002368 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAP1B | ||
Ensembl ID: | ENSTBEG00000013380 | ||
Aliases: | None | ||
Description: | RAP1B, member of RAS oncogene family [Source:HGNC Symbol;Acc:9857] |
Percent Identity: | 78.1 % |
Parental protein coverage: | 73.91 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL |
MREYKLVVLGS.G.GKS.LTV.FV..IF..K.DP.IE.S.RKQV.VDAQ.C.LEIL..AGTEQ.TA.RDL | |
Retrocopy | MREYKLVVLGSEGIGKSVLTVRFV*EIFLVKCDPRIEYSCRKQVAVDAQPCVLEILAMAGTEQ*TARRDL |
Parental | YMK-NGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLAR |
....NGQGFALVY.ITAQSTFNDLQDLRE.ILR.KDTDDV.MIL.GN.C.LEDERVVGKEQGQNLAR | |
Retrocopy | SLQ<NGQGFALVYFITAQSTFNDLQDLRELILRLKDTDDVSMILAGNNCNLEDERVVGKEQGQNLAR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008637 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007261 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008272 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000025649 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016460 | 1 retrocopy | |
Mus musculus | ENSMUSG00000052681 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003573 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000005746 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011497 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000030014 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003830 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013380 | 4 retrocopies |