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ABOUT THIS RECORD
ID:
MNEST035025
species:
Daphnia pulex
source:
miRBase, original name:
dpu-mir-279b
(
MI0016447
)
Taxonomy by NCBI:
Daphnia pulex
Daphnia
Daphniidae
Anomopoda
Cladocera
Diplostraca
Phyllopoda
Branchiopoda
Crustacea
Pancrustacea
Mandibulata
Arthropoda
Panarthropoda
Protostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACTAGAACCCACACTCGTCCGG
miRNA*
GGCGAGTTCGGTTTTAGTTGTA
mismatches:
5
bulges:
2
View larger
pre-miRNA
ATCTTGAGCATACGTCAGTC
GGCGAGTTCGGTTTTAGTTGTA
TTTTAAATTTAGTCGGTA
TGACTAGAACCCACACTCGTCCGG
TTGCTGTATTCTATTT
C
dot-bracket secondary structure
......((.(((((.((..(
(((((((..(((((((((..((
((............))))
..)))))))))...))))).))).
.)).))))).))....
.
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ,
Proc Biol Sci. 278:298-306(2011).
,
"A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"