miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Daphnia pulex, Daphnia magna



ABOUT THIS RECORD

ID: MNEST035025
species: Daphnia pulex
source: miRBase, original name: dpu-mir-279b (MI0016447)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGAACCCACACTCGTCCGG

miRNA*
GGCGAGTTCGGTTTTAGTTGTA

mismatches: 5
bulges: 2

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pre-miRNA
ATCTTGAGCATACGTCAGTCGGCGAGTTCGGTTTTAGTTGTATTTTAAATTTAGTCGGTATGACTAGAACCCACACTCGTCCGGTTGCTGTATTCTATTT
C


dot-bracket secondary structure
......((.(((((.((..((((((((..(((((((((..((((............))))..)))))))))...))))).)))..)).))))).))....
.



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"




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