miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST035025
species: Daphnia pulex
source: miRBase, original name: dpu-mir-279b (MI0016447)

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACTAGAACCCACACTCGTCCGG

miRNA*
GGCGAGTTCGGTTTTAGTTGTA

mismatches: 5
bulges: 2

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pre-miRNA
ATCTTGAGCATACGTCAGTCGGCGAGTTCGGTTTTAGTTGTATTTTAAATTTAGTCGGTATGACTAGAACCCACACTCGTCCGGTTGCTGTATTCTATTT
C


dot-bracket secondary structure
......((.(((((.((..((((((((..(((((((((..((((............))))..)))))))))...))))).)))..)).))))).))....
.



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"




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