ABOUT THIS RECORDspecies: Daphnia pulex
source: miRBase, original name: dpu-mir-279b (MI0016447)
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACTAGAACCCACACTCGTCCGG miRNA* GGCGAGTTCGGTTTTAGTTGTA mismatches: 5 bulges: 2 |
pre-miRNA
ATCTTGAGCATACGTCAGTCGGCGAGTTCGGTTTTAGTTGTATTTTAAATTTAGTCGGTATGACTAGAACCCACACTCGTCCGGTTGCTGTATTCTATTT
C
dot-bracket secondary structure
......((.(((((.((..((((((((..(((((((((..((((............))))..)))))))))...))))).)))..)).))))).))....
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
ATCTTGAGCATACGTCAGTCGGCGAGTTCGGTTTTAGTTGTATTTTAAATTTAGTCGGTATGACTAGAACCCACACTCGTCCGGTTGCTGTATTCTATTT
C
dot-bracket secondary structure
......((.(((((.((..((((((((..(((((((((..((((............))))..)))))))))...))))).)))..)).))))).))....
.
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ, Proc Biol Sci. 278:298-306(2011)., "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata"
