miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST046706
species: Lactuca sativa
miRNA family: MIR156
source: microPC, original name: miR156

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCAC

miRNA*
 GCTCACCCTCTGTCTGTC

mismatches: 2
bulges: 1
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pre-miRNA
 TGACAGAAGAGAGTGAGCACCCATGGTCTTTCTCGCAAATAGTGCGCTTTCATGTGCTTGAAGCTATGCGTGCTCACCCTCTGTCTGTC

dot-bracket secondary structure
.((((((((((.((((((((.((((((..(((..(((....(((......))).)))..))))))))).)))))))).)))).))))))


SIMILARITIES
miRBase ghr-MIR156b: 0.00000002

PMRD ghr-miR156b: 0.00000002

microPC miR156: 2e-45		UniProt no hits

RFAM mir-156: 0.000001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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