miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pristionchus pacificus



ABOUT THIS RECORD

ID: MNEST009242
species: Pristionchus pacificus
miRNA family: miR-1410
source: miRNEST

Taxonomy by NCBI:
Pristionchus pacificus Pristionchus Neodiplogasteridae Diplogasterida Chromadorea Nematoda Pseudocoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGGACGGAGTCGTGAGGGGAA

miRNA*
ATCTCATCTTTTTGCCCAG

mismatches: 3
bulges: 2

View larger
pre-miRNA
GGGCTTCCGATGGGACGGAGTCGTGAGGGGAACGGGATTCGAGGGGCAGCTGGCCATATCAGGAAATGCGAAGAGGGCCGCCGAACAGGAATACTATCAG
AATATTCAATTGTACGAGTAGGGCAATCAATAAGTTGTCGATTTCACTCATTATCTCATCTTTTTGCCCAGTTGAACTG


dot-bracket secondary structure
.((.(((...((((.(((((..((((((..((.(((....((..(((.....)))...))..(((((.(((.((..(((((((.(((.(((((.......
..)))))...))).)).))..)))..)).........)))))))).))).)).))))))..)))))))))...))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|P30640|BUD13_CAEEL: 0.000004

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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