miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Rattus norvegicus, Macaca fascicularis, Papio anubis, Homo sapiens, Peromyscus maniculatus bairdii, Pongo abelii, Oryctolagus cuniculus, Macaca nemestrina, Cavia porcellus, Peromyscus polionotus subgriseus, Pan troglodytes verus, Macaca mulatta



ABOUT THIS RECORD

ID: MNEST032079
species: Mus musculus
miRNA family: mir-449
source: miRBase, original name: mmu-mir-449c (MI0004645)

Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGCAGTGCATTGCTAGCTGG

miRNA*
GCTAGCTGCACTACCCTC

mismatches: 2
bulges: 3

View larger
pre-miRNA
AGGATGAAGTGTGGGTGTGTCAGGCAGGCAGTGCATTGCTAGCTGGCTGTTAGAACTTTATCCCAACAGTTGCTAGCTGCACTACCCTCTGCTGCACTCA
GAAGCATGC


dot-bracket secondary structure
.(.(((...(.((((((((.((((..((.((((((..((((((.(((((((.((......))..))))))))))))))))))).)).)))).))))))))
.)..))).)



SIMILARITIES
miRBase rno-mir-449c: 5e-37

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-449: 6e-46

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Solexa

references

[1] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I, Nucleic Acids Res. 34:1765-1771(2006)., "The expression profile of microRNAs in mouse embryos"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"




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