ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-449
source: miRBase, original name: mmu-mir-449c (MI0004645)
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGCAGTGCATTGCTAGCTGG miRNA* GCTAGCTGCACTACCCTC mismatches: 2 bulges: 3 |
pre-miRNA
AGGATGAAGTGTGGGTGTGTCAGGCAGGCAGTGCATTGCTAGCTGGCTGTTAGAACTTTATCCCAACAGTTGCTAGCTGCACTACCCTCTGCTGCACTCA
GAAGCATGC
dot-bracket secondary structure
.(.(((...(.((((((((.((((..((.((((((..((((((.(((((((.((......))..))))))))))))))))))).)).)))).))))))))
.)..))).)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Solexa
references
[1] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I, Nucleic Acids Res. 34:1765-1771(2006)., "The expression profile of microRNAs in mouse embryos"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
AGGATGAAGTGTGGGTGTGTCAGGCAGGCAGTGCATTGCTAGCTGGCTGTTAGAACTTTATCCCAACAGTTGCTAGCTGCACTACCCTCTGCTGCACTCA
GAAGCATGC
dot-bracket secondary structure
.(.(((...(.((((((((.((((..((.((((((..((((((.(((((((.((......))..))))))))))))))))))).)).)))).))))))))
.)..))).)
SIMILARITIES| miRBase rno-mir-449c: 5e-37 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 6e-46 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: MPSS, Solexa
references
[1] Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I, Nucleic Acids Res. 34:1765-1771(2006)., "The expression profile of microRNAs in mouse embryos"
[2] Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A, Mol Hum Reprod. 16:463-471(2010)., "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing"
