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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Glycine soja
,
Glycyrrhiza uralensis
,
Lotus japonicus
,
Medicago sativa
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Trifolium pratense
,
Cajanus cajan
,
Cicer arietinum
,
Glycine max
,
Vigna unguiculata
,
Medicago truncatula
,
Phaseolus vulgaris
ABOUT THIS RECORD
ID:
MNEST040749
species:
Medicago truncatula
miRNA family:
MIR1509
source:
miRBase, original name:
mtr-MIR1509
(
MI0010543
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTAATCTAGGAAAATACGGTG
miRNA*
CCGGATTTCCTTGATTAAAG
mismatches:
3
bulges:
1
View larger
pre-miRNA
CCCGGCCTCTCTCTTGCCTCATAGCTAGTTAGGGTTTTCGTTGCTGTCTCGTGTTTTCTTTTGATCCATTCAATTTTT
TTAATCTAGGAAAATACGGTG
G
AGAGGGTTTTTCTTTTTATTGTTTGAGATTGATATCTCTCGTCTTCTCTA
CCGGATTTCCTTGATTAAAG
AAATTTACTGGTTCATTATTATTTTTTAGC
TATGATGACAATGTGTATCCCAGCTCATTATGAGGCCTTTTTGTAAGGTCTGGG
dot-bracket secondary structure
((((((((..(....(((((((((..((((.((((...(((((..(((..((.........(((.(((.(.(((((((
((((((.((((((...(((((
(
((((((.....(........)...(((((....)))))...)))))))))
)))..)))))).))))))))
))))).).))).))).............))
...)))..)))))...)))).))))..)))))))))......)..))).)))))
SIMILARITIES
miRBase
mtr-MIR1509b
:
0.0002
PMRD
mtr-miR1509
:
6e-131
microPC
no hits
UniProt
no hits
RFAM
snoR69Y: 2e-26
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
Northern, Solexa
references
[
1
] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T,
BMC Genomics. 9:593(2008).
,
"High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"