miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST046439
species: Ipomoea batatas
source: microPC, original name: miR530

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTACACCTGCACCT

miRNA*
 GTGCAGAAGTAACTGCA

mismatches: 4
bulges: 0
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pre-miRNA
 TGCATTTACACCTGCACCTGCACTTGCCTCAGCCCAGATCGAAAGCCTAGCTGCTGTGGTTGCGCCGCCGCATGATGGTGTATGTGCGGCCGGCCGGCCG
GAAAATGATGATGGGATGAGCTGAGGTAGGTAGTAGGTGCAGAAGTAACTGCA

dot-bracket secondary structure
.(((.((((..((((((((((((((((((((((.((..(((..(((......)))..(((((.((((((((((..........)))))).))))))))).
...........)))..)).)))))))))))).))))))))))..)))).))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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Liczniki na strone;