Parental gene:

AMTR_s00006p00059970

Aliases:None
Description:hypothetical protein
Organism:Amborella (Amborella trichopoda)
Coordinates:AmTr_v1.0_scaffold00006:598417..606393(-)


>AMTR_s00006p00059970
ATGGCATACCGTAGAGCCCTGTCCTCTCTCATCAGGGGTGCCAAAACCGTCAGATCTCAACCGTCGAGCCTCATCAATAG
AGGACCAGAGCTTTACAGGCCGATATCATCTTCTTCGGGCCTTCTTCTCGACAAAGTTGCACAGTATGCGACATCGGCCG
CTGCAACTTCGTCGCCTCCACCCCCTGTAGCAACTCCTCCCGGTATTGGTAAAGATGGACCTCTTGGTAAGATCACTGAT
GAGTTCACAGGGGCTGGAGCCATTGGGAAGGTCTGTCAGGTGATTGGAGCAGTGGTGGATGTGAGGTTTGATGAGGGGTT
GCCTCCGATCTTGACTGCATTGGAGGTTTTGGATAACTCCATAAGGTTGGTTTTGGAGGTGGCTCAGCATTTGGGGGAGA
AAATGGTGAGGACCATTGCTATGGATGGGACTGAAGGGCTTGTCAGGGGCCAGAGGGTGCTCAACACTGGTTCTCCCATC
AAGGTACCAGTGGGTAGGGCTACACTTGGTCGCATTATCAATGTCATTGGGGAACCCATTGACGAAAGGGGTGAAATAAA
GACCGATCACTATTTGCCTATCCATCGTGAAGCTCCTTCATTTGTTGAACAAGCAACTGAGCAAGAGATTCTTGTTACTG
GTATCAAGGTCGTCGACTTGTTGGCACCTTACCAGCGTGGTGGAAAGATTGGGCTCTTCGGTGGTGCTGGTGTTGGCAAA
ACTGTGCTTATTATGGAGCTGATTAACAATGTCGCAAAGGCTCATGGTGGTTTTTCTGTCTTTGCTGGTGTTGGGGAACG
TACTCGGGAGGGTAACGATCTGTACAGGGAAATGATTGAGAGTGGTGTCATCAAGCTAGGTGAAAAACAGGCTGAGAGCA
AGTGTGCTCTTGTGTACGGACAAATGAATGAGCCGCCTGGTGCTCGTGCTCGTGTGGGGCTGACCGGGCTCACTGTAGCC
GAACATTTCAGAGATGCTGAAGGCCAAGATGTGCTTCTCTTCATTGACAACATTTTCCGTTTCACCCAAGCAAACTCTGA
AGTGTCTGCTCTGCTTGGGCGTATCCCATCTGCTGTGGGTTATCAACCAACCTTAGCCACTGATCTTGGAGGCTTGCAAG
AGCGTATCACAACAACAAAGAAGGGTTCGATCACTTCTGTGCAGGCTATTTACGTGCCTGCTGATGATTTGACTGATCCT
GCCCCTGCCACCACCTTTGCTCATCTTGATGCCACCACTGTGTTATCTCGTCAGATTTCAGAACTTGGTATCTACCCTGC
TGTGGATCCCCTTGATTCTACGTCGCGTATGCTTTCCCCTCACATTCTTGGGCAGGATCACTACAACACTGCTCGTGGTG
TCCAGAAGGTTCTTCAAAACTATAAGAATCTTCAGGATATTATTGCCATCCTGGGTATGGACGAGCTAAGTGAAGATGAC
AAGTTGACAGTGGCTCGTGCTAGGAAAATCCAGAGGTTCCTGAGTCAGCCTTTCCATGTTGCTGAGGTTTTCACGGGTGC
TCCAGGAAAATATGTGGAATTGAAGGAGAGCATTGTCAGCTTCCAGGGTGTATTGGATGGAAAGTATGATGATCTTCCCG
AGCAGTCATTCTACATGGTTGGTGGGATCGAAGAGGTCATTGCCAAAGCCGAGAAGATTGCCAAGGAGTCGGCCACCACC
TGA

Species Parental gene accession Homology type Retrogenes number
Arabidopsis thaliana AT5G08670 ortholog_one2many 1 retrogene
retro_atha_12,
Oryza sativa indica BGIOSGA017602 ortholog_one2many 2 retrogenes
retro_oind_104, retro_oind_87,
Brassica rapa Bra006013 ortholog_one2many 2 retrogenes
retro_brap_51, retro_brap_57,
Chlamydomonas reinhardtii CHLREDRAFT_78348 ortholog_one2one 1 retrogene
retro_crei_1,
Aegilops tauschii F775_32946 ortholog_one2many 1 retrogene
retro_atau_18,
Hordeum vulgare MLOC_70791 ortholog_one2many 1 retrogene
retro_hvul_13,
Oryza glaberrima ORGLA01G0220100 ortholog_one2many 1 retrogene
retro_ogla_47,
Triticum aestivum TRAES3BF058700080CFD_g ortholog_one2one 2 retrogenes
retro_taes_170, retro_taes_31,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_atri_7 70.09 80.00
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Download FASTA sequences of all AMTR_s00006p00059970 retrocopies